halophFGD

Basic Information

Locus ID: nbisL1-mrna-5858

Species & Taxonomic ID: Rhizophora mangle & 40031

Genome Assembly: GCA_037832345.1

Description: Belongs to the NPH3 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
002174F_pilon	2840161	2841774	-	nbisL1-mrna-5858

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.76	51,960.60 Da	40.88	89.87	-0.34

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03000	NPH3 family	290	316	6.5E-8	IPR027356
Pfam	PF03000	NPH3 family	100	272	1.6E-49	IPR027356
ProSiteProfiles	PS51649	NPH3 domain profile.	100	340	50.855137	IPR027356
MobiDBLite	mobidb-lite	consensus disorder prediction	434	459	-	-
Coils	Coil	Coil	386	413	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT5G03250.2	-
RefSeq	XP_021683812.1	-
Swiss-Prot	Q9LYW0	BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1
TrEMBL	A0A2C9VCB1	-

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg14967, jg20811, jg22317, jg3479
Aizoaceae	Mesembryanthemum crystallinum	2	gene_14297, gene_664
Amaranthaceae	Atriplex hortensis	2	Ah016124, Ah032856
Amaranthaceae	Beta vulgaris	2	BVRB_2g040100, BVRB_8g187520
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg23977, Sbi_jg25693, Sbi_jg29712, Sbi_jg29713 ... Sbi_jg43232, Sbi_jg9529
Amaranthaceae	Salicornia europaea	3	Seu_jg12227, Seu_jg18664, Seu_jg19101
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00004412, GOSA_00028435
Amaranthaceae	Suaeda glauca	5	Sgl44921, Sgl45043, Sgl49813, Sgl66473, Sgl70807
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000014291, gene:ENSEOMG00000020388 ... gene:ENSEOMG00000034448, gene:ENSEOMG00000048405, gene:ENSEOMG00000051633
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1BG0009390, CQ.Regalona.r1.2AG0006750 ... CQ.Regalona.r1.8AG0011020, CQ.Regalona.r1.8BG0013150
Anacardiaceae	Pistacia vera	3	pistato.v30076130, pistato.v30170970, pistato.v30272580
Apiaceae	Apium graveolens	7	Ag11G04946, Ag2G00706, Ag3G02676, Ag6G01148, Ag7G00263 ... Ag7G00982, Ag8G00740
Arecaceae	Cocos nucifera	6	COCNU_04G007390, COCNU_06G009760, COCNU_06G020580 ... COCNU_12G000540, COCNU_14G006430, COCNU_14G008730
Arecaceae	Phoenix dactylifera	6	gene-LOC103695810, gene-LOC103696802, gene-LOC103703645 ... gene-LOC103710509, gene-LOC103714620, gene-LOC103720574
Asparagaceae	Asparagus officinalis	4	AsparagusV1_06.1912.V1.1, AsparagusV1_06.292.V1.1 ... AsparagusV1_07.3456.V1.1, AsparagusV1_07.3944.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G18318, Ftri17G14064, Ftri17G21018, Ftri18G19124 ... Ftri6G20680, Ftri6G28686
Brassicaceae	Arabidopsis thaliana	3	AT1G30440.1, AT5G03250.1, AT5G13600.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007010m.g.v1.0, Thhalv10013087m.g.v1.0 ... Thhalv10015450m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g26260.v2.2, Sp6g30430.v2.2, Sp6g39480.v2.2
Brassicaceae	Brassica nigra	6	BniB01g024150.2N, BniB02g048950.2N, BniB02g057140.2N ... BniB02g057980.2N, BniB04g045960.2N, BniB08g001010.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq02G0606, Ceq04G0538, Ceq08G1325
Casuarinaceae	Casuarina glauca	3	Cgl02G0620, Cgl04G0636, Cgl08G1350
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g15720, gene.Cymno07g06610, gene.Cymno07g11230
Hydrocharitaceae	Thalassia testudinum	4	gene.Thate04g01790, gene.Thate04g17350, gene.Thate05g03540 ... gene.Thate07g18730
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-5946
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG01.1435, evm.TU.LG02.1038
Plantaginaceae	Plantago ovata	3	Pov_00005103, Pov_00006334, Pov_00013065
Plumbaginaceae	Limonium bicolor	4	Lb2G08454, Lb2G08467, Lb4G25214, Lb5G29321
Poaceae	Echinochloa crus-galli	12	AH01.1259, AH02.3489, AH08.243, AH09.2429, BH01.1464 ... BH02.3468, BH08.224, BH09.2650, CH02.3008, CH06.2664, CH08.266, CH09.2871
Poaceae	Eleusine coracana subsp. coracana	7	gene-QOZ80_1AG0035750, gene-QOZ80_1BG0085780 ... gene-QOZ80_3AG0224330, gene-QOZ80_3BG0269330, gene-QOZ80_4BG0333240, gene-QOZ80_8AG0616330, gene-QOZ80_8BG0643870
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.2HG0169280.1, HORVU.MOREX.r3.2HG0207070.1 ... HORVU.MOREX.r3.3HG0293570.1, HORVU.MOREX.r3.5HG0428840.1, HORVU.MOREX.r3.5HG0508410.2, HORVU.MOREX.r3.7HG0702520.1, HORVU.MOREX.r3.7HG0732100.1
Poaceae	Lolium multiflorum	5	gene-QYE76_001021, gene-QYE76_033128, gene-QYE76_046633 ... gene-QYE76_056125, gene-QYE76_063529
Poaceae	Oryza coarctata	9	Oco01G021900, Oco02G022470, Oco05G018850, Oco06G019640 ... Oco07G016950, Oco15G001420, Oco16G001530, Oco23G010370, Oco24G010220
Poaceae	Oryza sativa	2	LOC_Os04g54400.1, LOC_Os08g03650.1
Poaceae	Paspalum vaginatum	4	gene-BS78_01G144800, gene-BS78_03G297300 ... gene-BS78_06G247800, gene-BS78_07G032900
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0104482, Pt_Chr0402533, Pt_Chr0601628, Pt_Chr0704437
Poaceae	Sporobolus alterniflorus	13	Chr01G009420, Chr02G007940, Chr03G017640, Chr04G024840 ... Chr05G025570, Chr07G023650, Chr12G027600, Chr16G000990, Chr17G000940, Chr20G013240, Chr23G005390, Chr26G016420, Chr29G012100
Poaceae	Thinopyrum elongatum	5	Tel2E01G896900, Tel3E01G512200, Tel5E01G099600 ... Tel5E01G597200, Tel7E01G532200
Poaceae	Triticum dicoccoides	10	gene_TRIDC2AG073850, gene_TRIDC2BG080570 ... gene_TRIDC3AG046190, gene_TRIDC3BG052520, gene_TRIDC5AG006520, gene_TRIDC5AG054940, gene_TRIDC5BG007590, gene_TRIDC5BG058770, gene_TRIDC7AG043160, gene_TRIDC7BG034430
Poaceae	Triticum aestivum	15	TraesCS2A02G526900.1, TraesCS2B02G557300.2 ... TraesCS2D02G529600.1, TraesCS3A02G317300.1, TraesCS3B02G349200.1, TraesCS3D02G314000.1, TraesCS5A02G042600.1, TraesCS5A02G375500.3, TraesCS5B02G046200.2, TraesCS5B02G377600.1, TraesCS5D02G051100.1, TraesCS5D02G385100.1, TraesCS7A02G309700.1, TraesCS7B02G209700.1, TraesCS7D02G306400.1
Poaceae	Zea mays	4	Zm00001eb050610_P001, Zm00001eb069180_P001 ... Zm00001eb151470_P002, Zm00001eb261890_P001
Poaceae	Zoysia japonica	6	nbis-gene-11744, nbis-gene-20462, nbis-gene-22958 ... nbis-gene-39166, nbis-gene-39601, nbis-gene-41498
Poaceae	Zoysia macrostachya	6	Zma_g20524, Zma_g22424, Zma_g23566, Zma_g3195, Zma_g872 ... Zma_g8779
Portulacaceae	Portulaca oleracea	4	evm.TU.LG06.1800, evm.TU.LG11.1153, evm.TU.LG18.1048 ... evm.TU.LG20.827
Posidoniaceae	Posidonia oceanica	3	gene.Posoc05g06230, gene.Posoc08g07300, gene.Posoc08g08310
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_16_RagTag.865, evm.TU.Scaffold_2_RagTag.876
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-25031, nbisL1-mrna-4329
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-18812, nbisL1-mrna-5235
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-19229, nbisL1-mrna-9990
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.879, evm.TU.utg000022l.56
Rhizophoraceae	Kandelia obovata	1	Maker00016202
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-12632, nbisL1-mrna-54
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-10284, nbisL1-mrna-5858
Salicaceae	Populus euphratica	8	populus_peu00938, populus_peu06262, populus_peu11692 ... populus_peu17837, populus_peu20097, populus_peu25751, populus_peu25752, populus_peu37976
Solanaceae	Lycium barbarum	3	gene-LOC132606889, gene-LOC132631572, gene-LOC132633677
Solanaceae	Solanum chilense	3	SOLCI000078400, SOLCI000597600, SOLCI001415200
Solanaceae	Solanum pennellii	3	gene-LOC107002418, gene-LOC107011567, gene-LOC107029902
Tamaricaceae	Reaumuria soongarica	3	gene_14197, gene_4526, gene_9700
Tamaricaceae	Tamarix chinensis	2	TC06G1133, TC11G2004
Zosteraceae	Zostera marina	3	Zosma01g35710.v3.1, Zosma04g21970.v3.1, Zosma06g04930.v3.1