Basic Information
Locus ID:
nbisL1-mrna-5852
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
CPK13
Description:
calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 8344309 | 8348448 | + | nbisL1-mrna-5852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 59,496.11 Da | 44.45 | 81.59 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 52 | 315 | 1.61894E-120 | - |
| Pfam | PF00069 | Protein kinase domain | 55 | 316 | 3.5E-67 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 362 | 422 | 1.0E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 434 | 492 | 5.9E-8 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 34 | 341 | 1.75E-76 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 345 | 518 | 4.61E-39 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 139 | 324 | 7.0E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 54 | 138 | 7.3E-25 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 325 | 495 | 9.2E-48 | - |
| SMART | SM00054 | efh_1 | 399 | 427 | 0.24 | IPR002048 |
| SMART | SM00054 | efh_1 | 363 | 391 | 1.6E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 435 | 463 | 5.0E-6 | IPR002048 |
| SMART | SM00220 | serkin_6 | 53 | 316 | 9.9E-81 | IPR000719 |
| SMART | SM00054 | efh_1 | 471 | 494 | 27.0 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 395 | 430 | 8.683267 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 53 | 316 | 42.986454 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 431 | 466 | 15.657116 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 359 | 394 | 15.099209 | IPR002048 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 59 | 82 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 444 | 456 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 372 | 384 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 173 | 185 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 31 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51850.1 | calcium-dependent protein kinase 13. member of Calcium Dependent Protein Kinase | 0 |
| RefSeq | XP_016738692.1 | calcium-dependent protein kinase 13 [Gossypium hirsutum] | 0 |
| Q8W4I7 | Calcium-dependent protein kinase 13 OS=Arabidopsis thaliana OX=3702 GN=CPK13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A7J9CQP4 | Calcium-dependent protein kinase 13 OS=Gossypium gossypioides OX=34282 GN=Gogos_002214 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology