Basic Information
Locus ID:
nbisL1-mrna-584
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 6448359 | 6450934 | + | nbisL1-mrna-584 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 51,754.56 Da | 49.91 | 84.34 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 248 | 0.0021 | IPR001680 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 13 | 432 | 8.24E-33 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 313 | 443 | 3.2E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 277 | 5.8E-22 | IPR015943 |
| SMART | SM00320 | WD40_4 | 366 | 404 | 54.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 77 | 119 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 209 | 250 | 6.0E-4 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07590.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021654044.1 | WD repeat-containing protein WRAP73 [Hevea brasiliensis] | 0 |
| Q9P2S5 | WD repeat-containing protein WRAP73 OS=Homo sapiens OX=9606 GN=WRAP73 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2IHD7 | ANAPC4_WD40 domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14135 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14143 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028152 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g175240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26843, Sbi_jg33728 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8417 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00003063 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl04408, Sgl09477, Sgl71762, Sgl73131, Sgl75331, Sgl76678 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000007905, gene:ENSEOMG00000035226 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0001670, CQ.Regalona.r1.9BG0004020 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30187970 |
| Apiaceae | Apium graveolens | 1 | Ag10G02697 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G005080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103713581 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3229.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G12420 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013487m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35280.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053350.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1140 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1233 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g09090 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0407s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g01660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2394 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035304 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23704 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.2897, BH01.3235, CH01.3467, CH05.1168 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0116810, gene-QOZ80_2BG0170530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0057670.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_012698 |
| Poaceae | Oryza coarctata | 2 | Oco19G010340, Oco20G010160 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g41370.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G285100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0503222, Pt_Chr0503267 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G027710, Chr09G005070, Chr13G019740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G369000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG032860, gene_TRIDC1BG038240 |
| Poaceae | Triticum aestivum | 2 | TraesCS1A02G217800.1, TraesCS1B02G231200.2 |
| Poaceae | Zea mays | 1 | Zm00001eb325360_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38013 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12919, Zma_g15690 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG13.889, evm.TU.LG21.543 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_11_RagTag.1239 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12428, nbisL1-mrna-12540 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18626, nbisL1-mrna-6876 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12808 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000010l.279 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008713 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-584 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-8876 |
| Salicaceae | Populus euphratica | 2 | populus_peu03807, populus_peu34647 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631673 |
| Solanaceae | Solanum chilense | 2 | SOLCI005455600, SOLCI006462300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012299 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.7852_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2017 |
| Zosteraceae | Zostera marina | 2 | Zosma03g36130.v3.1, Zosma03g36190.v3.1 |