Basic Information
Locus ID:
nbisL1-mrna-5818
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
WDR3
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 2576279 | 2581906 | - | nbisL1-mrna-5818 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 104,683.96 Da | 39.53 | 89.53 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 102 | 516 | 2.91794E-42 | - |
| CDD | cd00200 | WD40 | 399 | 695 | 1.06291E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 402 | 434 | 0.049 | IPR001680 |
| Pfam | PF04003 | Dip2/Utp12 Family | 798 | 898 | 1.9E-18 | IPR007148 |
| Pfam | PF00400 | WD domain, G-beta repeat | 101 | 135 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 65 | 93 | 7.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 658 | 695 | 1.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 177 | 1.5E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 182 | 218 | 7.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 515 | 0.0043 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 577 | 610 | 8.4E-6 | IPR001680 |
| Pfam | PF03498 | Cytolethal distending toxin A/C domain | 417 | 484 | 1.1E-4 | IPR003558 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 265 | 465 | 3.4E-7 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 70 | 675 | 1.41E-66 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 445 | 640 | 3.5E-48 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 228 | 444 | 1.2E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 221 | 1.6E-47 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 641 | 710 | 8.5E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 572 | 611 | 6.7E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 516 | 7.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 656 | 695 | 2.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 96 | 135 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 437 | 474 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 219 | 8.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 396 | 434 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 614 | 653 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 138 | 177 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 569 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 48 | 93 | 5.0E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 187 | 221 | 9.282875 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 484 | 516 | 11.043142 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 221 | 11.07656 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 62 | 102 | 10.14085 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 103 | 136 | 12.26195 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 579 | 620 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 484 | 516 | 9.256512 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 663 | 695 | 13.68318 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 403 | 443 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 621 | 662 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 145 | 180 | 12.182859 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 103 | 136 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 663 | 695 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 186 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 579 | 613 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 621 | 653 | 9.177421 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 164 | 178 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 122 | 136 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 164 | 178 | 4.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 598 | 612 | 4.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 122 | 136 | 4.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 925 | 945 | - | - |
| Coils | Coil | Coil | 294 | 314 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21540.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_002519449.1 | WD repeat-containing protein 3 isoform X1 [Ricinus communis] | 0 |
| Q8BHB4 | WD repeat-containing protein 3 OS=Mus musculus OX=10090 GN=Wdr3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JB97 | WD-repeat protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3518 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_1104, gene_20182 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030622 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27200, Sbi_jg33331 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8035 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005714 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71296, Sgl74891 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008406, gene:ENSEOMG00000038751 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0018460, CQ.Regalona.r1.7BG0021050 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30273730 |
| Apiaceae | Apium graveolens | 1 | Ag10G01989 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695733 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.990.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G33505 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G21540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024329m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13750.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g020710.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1562 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1614, Cgl02G1630 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g06070 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0249s00016.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g17820 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5980 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1549 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00005009, Pov_00025481 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G24696 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.4884, CH01.5486 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0234020, gene-QOZ80_3BG0293970 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0411240.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_070696, gene-QYE76_070719 |
| Poaceae | Oryza coarctata | 2 | Oco05G003130, Oco06G003140 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g05720.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G478200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100050, Pt_Chr0100071 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G037100, Chr12G002370 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G524700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG055020, gene_TRIDC4BG053610 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G370000.1, TraesCS4B02G317800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb004160_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4475 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4408 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1659, evm.TU.LG11.1012 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g08170, gene.Posoc08g08180 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.918 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4286 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10025 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.907 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005094 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-12605 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5818 |
| Salicaceae | Populus euphratica | 1 | populus_peu11629 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132629973, gene-LOC132630654 |
| Solanaceae | Solanum chilense | 1 | SOLCI003887000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002644 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5583 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1968 |
| Zosteraceae | Zostera marina | 1 | Zosma05g33080.v3.1 |