Basic Information
Locus ID:
nbisL1-mrna-5799
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
ATP-dependent DNA helicase Q-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 5487650 | 5497566 | - | nbisL1-mrna-5799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 121,735.25 Da | 49.45 | 76.56 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 444 | 689 | 1.93047E-96 | - |
| Pfam | PF09382 | RQC domain | 758 | 839 | 3.4E-10 | IPR018982 |
| Pfam | PF00570 | HRDC domain | 882 | 950 | 7.6E-15 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 458 | 669 | 5.2E-16 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 436 | 682 | 7.56E-35 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 688 | 769 | 1.14E-12 | IPR027417 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 754 | 837 | 1.03E-6 | IPR036390 |
| SUPERFAMILY | SSF47819 | HRDC-like | 881 | 954 | 4.36E-14 | IPR010997 |
| Gene3D | G3DSA:3.40.50.300 | - | 690 | 741 | 5.5E-8 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 526 | 689 | 2.0E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 420 | 508 | 4.5E-20 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 874 | 961 | 3.5E-23 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 749 | 835 | 9.4E-10 | IPR036388 |
| SMART | SM00341 | hrdc7 | 878 | 960 | 4.3E-6 | IPR002121 |
| SMART | SM00956 | RQC_2 | 730 | 838 | 1.7E-5 | IPR018982 |
| SMART | SM00487 | ultradead3 | 452 | 698 | 1.1E-24 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 526 | 740 | 2.4E-79 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 464 | 682 | 18.198574 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 878 | 960 | 18.357246 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 621 | 630 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 1013 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 1013 | - | - |
| Coils | Coil | Coil | 316 | 343 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_021658967.1 | ATP-dependent DNA helicase Q-like 4A [Hevea brasiliensis] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A251K0S2 | DNA helicase OS=Manihot esculenta OX=3983 GN=MANES_10G122800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology