Basic Information
Locus ID:
nbisL1-mrna-5772
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
mitochondrial
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 4965925 | 4973624 | - | nbisL1-mrna-5772 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.32 | 27,983.02 Da | 48.74 | 91.01 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08669 | Glycine cleavage T-protein C-terminal barrel domain | 178 | 248 | 5.4E-7 | IPR013977 |
| Pfam | PF01571 | Aminomethyltransferase folate-binding domain | 3 | 149 | 1.5E-21 | IPR006222 |
| SUPERFAMILY | SSF103025 | Folate-binding domain | 3 | 170 | 2.83E-36 | - |
| SUPERFAMILY | SSF101790 | Aminomethyltransferase beta-barrel domain | 178 | 250 | 2.13E-7 | IPR029043 |
| Gene3D | G3DSA:3.30.1360.120 | Probable tRNA modification gtpase trme; domain 1 | 1 | 249 | 1.3E-52 | IPR027266 |
| TIGRFAM | TIGR03317 | ygfZ_signature: folate-binding protein YgfZ | 120 | 184 | 1.0E-18 | IPR017703 |
| PIRSF | PIRSF006487 | GCST | 1 | 258 | 3.2E-22 | IPR028896 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60990.1 | Glycine cleavage T-protein family. | 0 |
| RefSeq | XP_017632177.1 | PREDICTED: putative transferase At1g60990, chloroplastic isoform X1 [Gossypium arboreum] | 0 |
| Q681Y3 | Putative transferase At1g60990, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g60990 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Q3AZI7 | GCV_T domain-containing protein/GCV_T_C domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_04704 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg1280 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30064260 |
| Apiaceae | Apium graveolens | 1 | Ag6G01857 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1775.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G24419 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G60990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10023478m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g03530.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g075200.2N, BniB06g024310.2N, BniB07g046940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0171 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0203 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0867s00003.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.743 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G06246, Lb4G23835, Lb8G36509 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.763 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-7348 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17671 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5772 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.485 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011484 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8319 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-873, nbisL1-mrna-874 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598691 |
| Solanaceae | Solanum chilense | 1 | SOLCI002907900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008309 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30123_chr10_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0744 |