Basic Information
Locus ID:
nbisL1-mrna-5755
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7420948 | 7423965 | + | nbisL1-mrna-5755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 63,052.03 Da | 43.49 | 84.56 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01593 | Flavin containing amine oxidoreductase | 456 | 520 | 4.9E-7 | IPR002937 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 444 | 542 | 3.08E-6 | IPR036188 |
| Gene3D | G3DSA:1.10.3110.10 | protoporphyrinogen ix oxidase, domain 3 | 539 | 561 | 4.3E-17 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 445 | 480 | 4.3E-17 | IPR036188 |
| Gene3D | G3DSA:3.90.660.20 | Protoporphyrinogen oxidase, mitochondrial; domain 2 | 481 | 538 | 4.3E-17 | - |
| ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 50 | 72 | - | IPR013087 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 381 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28260.1 | 0 | |
| RefSeq | XP_039019470.1 | uncharacterized protein LOC120150968 isoform X1 [Hibiscus syriacus] | 0 |
| Q94IG7 | Protoporphyrinogen oxidase 2 OS=Spinacia oleracea OX=3562 GN=POX2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2Z5K9 | C2H2-type domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111027pilonHSYRG00310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg38180 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25881 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah012153 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g206590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11795, Sbi_jg46608 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21029 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00016790 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80067, Sgl82504 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000016399, gene:ENSEOMG00000037215 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0007240, CQ.Regalona.r1.9BG0015110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30019720 |
| Apiaceae | Apium graveolens | 1 | Ag3G00286 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012500 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719200 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1649.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G27403 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G28260.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024944m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g26220.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g083440.2N, BniB03g011840.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2601 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2686 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g01840 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g09530 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5755 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1861 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004521 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G20651 |
| Poaceae | Echinochloa crus-galli | 1 | AH01.1687 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0112650, gene-QOZ80_2BG0166020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0047580.1 |
| Poaceae | Oryza coarctata | 2 | Oco19G007300, Oco20G007210 |
| Poaceae | Oryza sativa | 1 | LOC_Os10g35710.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G186400 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G309200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG025760, gene_TRIDC1BG031270 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G169000.1, TraesCS1B02G187900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb044390_P005, Zm00001eb044450_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45333 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12699 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1316, evm.TU.LG21.1235 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g04530 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.1369, evm.TU.Scaffold_9_RagTag.1253 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11885, nbisL1-mrna-20915 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14286, nbisL1-mrna-8704 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-11093, nbisL1-mrna-21240 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.775, evm.TU.utg000006l.800 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009733, Maker00013889 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10325, nbisL1-mrna-1280 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-15359, nbisL1-mrna-4821, nbisL1-mrna-7132 |
| Salicaceae | Populus euphratica | 1 | populus_peu16844 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630472 |
| Solanaceae | Solanum chilense | 1 | SOLCI006368500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002546 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13698 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1775 |
| Zosteraceae | Zostera marina | 1 | Zosma05g29830.v3.1 |