Basic Information
Locus ID:
nbisL1-mrna-5740
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
protein serine/threonine kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 4215640 | 4219578 | - | nbisL1-mrna-5740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 35,905.18 Da | 24.16 | 91.64 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 49 | 309 | 6.4E-35 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 32 | 312 | 7.69E-59 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 24 | 130 | 1.1E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 131 | 317 | 3.3E-39 | - |
| SMART | SM00220 | serkin_6 | 48 | 312 | 5.9E-22 | IPR000719 |
| PIRSF | PIRSF000654 | ILK | 14 | 317 | 9.4E-20 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 48 | 317 | 33.064388 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 169 | 181 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 54 | 83 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01020.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_037491158.1 | probable serine/threonine-protein kinase PBL15 [Jatropha curcas] | 0 |
| Q8GXZ3 | Probable serine/threonine-protein kinase PBL8 OS=Arabidopsis thaliana OX=3702 GN=PBL8 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A6N385 | Protein kinase domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_028368 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza sativa | 1 | LOC_Os11g29510.1 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.46846.1, evm.TU.Scaffold_1_RagTag.1950 |
| Rhizophoraceae | Carallia pectinifolia | 6 | nbisL1-mrna-5739, nbisL1-mrna-5740, nbisL1-mrna-5741 ... |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9464 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3575 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.304 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18667, nbisL1-mrna-4866 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13893, nbisL1-mrna-13895 |