halophFGD

Basic Information

Locus ID: nbisL1-mrna-5727

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	7186362	7189902	-	nbisL1-mrna-5727

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.45	35,879.11 Da	53.60	63.26	-0.51

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF05623	Protein of unknown function (DUF789)	15	300	8.9E-83	IPR008507

KEGG Pathway

KO Term:

K18643 (katanin p80 WD40 repeat-containing subunit B1)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G03420.1	Protein of unknown function (DUF789).
RefSeq	XP_039019436.1	uncharacterized protein LOC120150906 [Hibiscus syriacus]
TrEMBL	A0A5D2LFC5	BURP domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D04G185600v1 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	9	jg11258, jg24219, jg28075, jg34962, jg35148, jg37519, jg5241 ... jg8928, jg9130
Aizoaceae	Mesembryanthemum crystallinum	4	gene_18499, gene_19949, gene_25855, gene_2987
Amaranthaceae	Atriplex hortensis	4	Ah007229, Ah019151, Ah025623, Ah037342
Amaranthaceae	Beta vulgaris	3	BVRB_3g048100, BVRB_6g142440, BVRB_9g208660
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg11850, Sbi_jg12853, Sbi_jg37976, Sbi_jg46559 ... Sbi_jg53020, Sbi_jg6108
Amaranthaceae	Salicornia europaea	3	Seu_jg15730, Seu_jg21082, Seu_jg8841
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00006175, GOSA_00020990, GOSA_00026904
Amaranthaceae	Suaeda glauca	10	Sgl00892, Sgl05846, Sgl05969, Sgl32814, Sgl32830, Sgl38096 ... Sgl80183, Sgl80184, Sgl82632, Sgl82633
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000000369, gene:ENSEOMG00000001225 ... gene:ENSEOMG00000003311, gene:ENSEOMG00000005010, gene:ENSEOMG00000016517, gene:ENSEOMG00000027993, gene:ENSEOMG00000029397, gene:ENSEOMG00000040716, gene:ENSEOMG00000043482, gene:ENSEOMG00000050882
Amaranthaceae	Chenopodium quinoa	6	CQ.Regalona.r1.3AG0001030, CQ.Regalona.r1.3BG0001090 ... CQ.Regalona.r1.6AG0013820, CQ.Regalona.r1.6BG0014530, CQ.Regalona.r1.9AG0007130, CQ.Regalona.r1.9BG0014900
Anacardiaceae	Pistacia vera	7	pistato.v30008640, pistato.v30019510, pistato.v30146870 ... pistato.v30147120, pistato.v30212820, pistato.v30215680, pistato.v30233690
Apiaceae	Apium graveolens	10	Ag11G03370, Ag1G01582, Ag2G00615, Ag2G02492, Ag3G00273 ... Ag3G02194, Ag6G00521, Ag7G01232, Ag7G01233, Ag9G01900
Arecaceae	Cocos nucifera	11	COCNU_01G001510, COCNU_03G008260, COCNU_06G009560 ... COCNU_08G009910, COCNU_10G010660, COCNU_14G005990, COCNU_14G006300, COCNU_16G004120, contig69133899G000010, scaffold006699G000060, scaffold014458G000030
Arecaceae	Phoenix dactylifera	13	gene-LOC103697215, gene-LOC103697988, gene-LOC103698015 ... gene-LOC103709317, gene-LOC103712618, gene-LOC103713936, gene-LOC103714644, gene-LOC103714801, gene-LOC103716400, gene-LOC103718163, gene-LOC103720029, gene-LOC103720972, gene-LOC120104708
Asparagaceae	Asparagus officinalis	7	AsparagusV1_01.3166.V1.1, AsparagusV1_01.3271.V1.1 ... AsparagusV1_01.948.V1.1, AsparagusV1_04.3460.V1.1, AsparagusV1_07.2143.V1.1, AsparagusV1_Unassigned.116.V1.1, AsparagusV1_Unassigned.542.V1.1
Asteraceae	Flaveria trinervia	10	Ftri13G10480, Ftri14G05543, Ftri16G21587, Ftri16G22946 ... Ftri18G09755, Ftri18G30191, Ftri2G05395, Ftri3G09862, Ftri8G17096, Ftri9G09930
Brassicaceae	Arabidopsis thaliana	11	AT1G03610.1, AT1G15030.1, AT1G17830.1, AT1G73210.1 ... AT2G01260.1, AT4G03420.1, AT4G16100.1, AT4G28150.1, AT5G08360.1, AT5G23380.1, AT5G49220.1
Brassicaceae	Eutrema salsugineum	11	Thhalv10000918m.g.v1.0, Thhalv10004298m.g.v1.0 ... Thhalv10005438m.g.v1.0, Thhalv10008018m.g.v1.0, Thhalv10008277m.g.v1.0, Thhalv10009965m.g.v1.0, Thhalv10014556m.g.v1.0, Thhalv10018895m.g.v1.0, Thhalv10025362m.g.v1.0, Thhalv10025924m.g.v1.0, Thhalv10028812m.g.v1.0
Brassicaceae	Schrenkiella parvula	11	Sp1g02520.v2.2, Sp1g13420.v2.2, Sp1g15910.v2.2 ... Sp2g12710.v2.2, Sp2g19600.v2.2, Sp2g23790.v2.2, Sp5g28180.v2.2, Sp6g03480.v2.2, Sp6g34580.v2.2, Sp7g14560.v2.2, Sp7g26100.v2.2
Brassicaceae	Brassica nigra	16	BniB02g070210.2N, BniB02g073520.2N, BniB02g083360.2N ... BniB03g000550.2N, BniB03g007260.2N, BniB03g025980.2N, BniB03g051470.2N, BniB04g005570.2N, BniB04g009820.2N, BniB04g032380.2N, BniB05g070450.2N, BniB06g040380.2N, BniB06g047160.2N, BniB07g040780.2N, BniB08g038770.2N, BniB08g046240.2N
Casuarinaceae	Casuarina equisetifolia	6	Ceq02G2576, Ceq03G1727, Ceq03G2441, Ceq06G1009, Ceq09G1083 ... Ceq09G2042
Casuarinaceae	Casuarina glauca	9	Cgl02G2658, Cgl03G1617, Cgl03G1846, Cgl03G2585, Cgl06G1040 ... Cgl09G1174, Cgl09G1175, Cgl09G1185, Cgl09G2234
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g09200, gene.Cymno03g05580, gene.Cymno04g13470 ... gene.Cymno05g14800, gene.Cymno09g09110, gene.Cymno10g01530, gene.Cymno11g01370
Dunaliellaceae	Dunaliella salina	1	Dusal.0255s00004.v1.0
Hydrocharitaceae	Thalassia testudinum	8	gene.Thate01g27660, gene.Thate03g00960, gene.Thate03g08590 ... gene.Thate06g04640, gene.Thate06g22150, gene.Thate08g00890, gene.Thate08g23290, gene.Thate09g19450
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-5459, nbisL1-mrna-5727, nbisL1-mrna-9387
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG03.1505, evm.TU.LG04.1909, evm.TU.LG04.397 ... evm.TU.LG10.262, evm.TU.LG10.314, evm.TU.LG11.1242
Plantaginaceae	Plantago ovata	4	Pov_00008470, Pov_00019190, Pov_00026066, Pov_00036780
Plumbaginaceae	Limonium bicolor	7	Lb1G01288, Lb1G01299, Lb2G11758, Lb3G16497, Lb4G22771 ... Lb5G27100, Lb5G28498
Poaceae	Echinochloa crus-galli	23	AH01.1727, AH01.488, AH02.1428, AH02.1731, AH02.733, CH01.85 ... AH03.712, AH07.4018, AH09.1663, BH01.1922, BH01.251, BH02.1503, BH02.1918, BH02.745, BH07.3832, BH09.1849, CH01.2177, CH02.1638, CH02.1932, CH02.843, CH03.940, CH07.3892, CH09.1980
Poaceae	Eleusine coracana subsp. coracana	12	gene-QOZ80_1AG0008890, gene-QOZ80_1AG0014290 ... gene-QOZ80_1BG0057620, gene-QOZ80_1BG0063110, gene-QOZ80_2AG0112220, gene-QOZ80_2AG0151310, gene-QOZ80_2BG0165620, gene-QOZ80_2BG0206720, gene-QOZ80_3AG0209540, gene-QOZ80_3BG0254660, gene-QOZ80_4AG0309820, gene-QOZ80_4BG0340990
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0046020.1, HORVU.MOREX.r3.3HG0261880.1 ... HORVU.MOREX.r3.5HG0528900.2, HORVU.MOREX.r3.6HG0632680.1
Poaceae	Lolium multiflorum	1	gene-QYE76_042221
Poaceae	Oryza coarctata	16	Oco01G001480, Oco01G009010, Oco01G011280, Oco02G001500 ... Oco02G009180, Oco02G011590, Oco03G026000, Oco04G026490, Oco05G028040, Oco06G029030, Oco07G011200, Oco08G010920, Oco13G004500, Oco14G005220, Oco19G006920, Oco20G006880
Poaceae	Oryza sativa	8	LOC_Os01g04590.1, LOC_Os01g20120.1, LOC_Os01g33000.1 ... LOC_Os02g58100.1, LOC_Os03g61580.1, LOC_Os04g44580.1, LOC_Os07g14310.1, LOC_Os10g35150.1
Poaceae	Paspalum vaginatum	6	gene-BS78_01G020600, gene-BS78_01G189900 ... gene-BS78_02G028400, gene-BS78_02G111300, gene-BS78_03G071500, gene-BS78_03G133900
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0105924, Pt_Chr0105960, Pt_Chr0303930, Pt_Chr0502731 ... Pt_Chr0502781, Pt_Chr0604663, Pt_Chr0604763
Poaceae	Sporobolus alterniflorus	18	Chr01G000960, Chr02G021790, Chr03G003950, Chr04G032030 ... Chr05G012630, Chr05G012660, Chr06G030340, Chr07G031030, Chr08G001140, Chr09G001790, Chr12G032590, Chr15G021700, Chr19G015670, Chr24G004450, Chr25G006790, Chr27G000120, Chr28G003860, Chr30G006690
Poaceae	Thinopyrum elongatum	6	Tel1E01G301000, Tel3E01G344300, Tel5E01G784700 ... Tel6E01G758700, Tel6E01G759100, Tel6E01G759300
Poaceae	Triticum dicoccoides	7	gene_TRIDC1AG025260, gene_TRIDC1BG030300 ... gene_TRIDC3BG033750, gene_TRIDC4AG054400, gene_TRIDC5BG076010, gene_TRIDC6AG060250, gene_TRIDC6BG073170
Poaceae	Triticum aestivum	11	TraesCS1A02G164600.1, TraesCS1B02G181500.1 ... TraesCS3A02G197000.1, TraesCS3B02G229200.1, TraesCS3D02G200000.2, TraesCS4A02G364600.2, TraesCS5B02G508900.3, TraesCS5D02G508900.1, TraesCS6A02G412300.1, TraesCS6B02G460300.1, TraesCS6D02G395000.1
Poaceae	Zea mays	10	Zm00001eb044820_P001, Zm00001eb063620_P001 ... Zm00001eb075970_P002, Zm00001eb097000_P003, Zm00001eb124830_P001, Zm00001eb130300_P001, Zm00001eb211200_P006, Zm00001eb221110_P002, Zm00001eb288950_P001, Zm00001eb304320_P003
Poaceae	Zoysia japonica	9	nbis-gene-13495, nbis-gene-15578, nbis-gene-16667 ... nbis-gene-43944, nbis-gene-45306, nbis-gene-51884, nbis-gene-5338, nbis-gene-7009, nbis-gene-7010
Poaceae	Zoysia macrostachya	7	Zma_g110, Zma_g12680, Zma_g15224, Zma_g2434, Zma_g4973 ... Zma_g7877, Zma_g9932
Portulacaceae	Portulaca oleracea	8	evm.TU.LG04.2522, evm.TU.LG06.1071, evm.TU.LG08.88 ... evm.TU.LG11.1372, evm.TU.LG11.450, evm.TU.LG13.722, evm.TU.LG21.408, evm.TU.LG23.314
Posidoniaceae	Posidonia oceanica	6	gene.Posoc01g30690, gene.Posoc02g14890, gene.Posoc04g02290 ... gene.Posoc04g23090, gene.Posoc06g04040, gene.Posoc10g10680
Rhizophoraceae	Bruguiera sexangula	9	evm.TU.30702.1, evm.TU.Scaffold_15_RagTag.43 ... evm.TU.Scaffold_17_RagTag.877, evm.TU.Scaffold_3_RagTag.624, evm.TU.Scaffold_4_RagTag.740, evm.TU.Scaffold_5_RagTag.1388, evm.TU.Scaffold_5_RagTag.858, evm.TU.Scaffold_6_RagTag.563, evm.TU.Scaffold_9_RagTag.1269
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-11479, nbisL1-mrna-11904, nbisL1-mrna-1348 ... nbisL1-mrna-16132, nbisL1-mrna-20898, nbisL1-mrna-23600, nbisL1-mrna-28616, nbisL1-mrna-3411
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-14533, nbisL1-mrna-15185, nbisL1-mrna-15859 ... nbisL1-mrna-1839, nbisL1-mrna-4556, nbisL1-mrna-4685, nbisL1-mrna-569
Rhizophoraceae	Ceriops zippeliana	7	nbisL1-mrna-11070, nbisL1-mrna-11491, nbisL1-mrna-1630 ... nbisL1-mrna-21254, nbisL1-mrna-21977, nbisL1-mrna-459, nbisL1-mrna-6322
Rhizophoraceae	Kandelia candel	7	evm.TU.utg000003l.782, evm.TU.utg000006l.219 ... evm.TU.utg000006l.220, evm.TU.utg000006l.811, evm.TU.utg000008l.479, evm.TU.utg000011l.321, evm.TU.utg000019l.839
Rhizophoraceae	Kandelia obovata	6	Maker00000859, Maker00007674, Maker00009155, Maker00012899 ... Maker00013326, Maker00014051
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-10081, nbisL1-mrna-10336, nbisL1-mrna-10882 ... nbisL1-mrna-10884, nbisL1-mrna-1272, nbisL1-mrna-13307, nbisL1-mrna-13758, nbisL1-mrna-14424, nbisL1-mrna-5304
Rhizophoraceae	Rhizophora mangle	8	nbisL1-mrna-13064, nbisL1-mrna-14167, nbisL1-mrna-15373 ... nbisL1-mrna-19234, nbisL1-mrna-25169, nbisL1-mrna-3680, nbisL1-mrna-4805, nbisL1-mrna-7484
Salicaceae	Populus euphratica	9	populus_peu07100, populus_peu08025, populus_peu08034 ... populus_peu16886, populus_peu18711, populus_peu18728, populus_peu21067, populus_peu22397, populus_peu22407
Solanaceae	Lycium barbarum	7	gene-LOC132608809, gene-LOC132617041, gene-LOC132620341 ... gene-LOC132626661, gene-LOC132630598, gene-LOC132636595, gene-LOC132641693
Solanaceae	Solanum chilense	8	SOLCI001466300, SOLCI001825500, SOLCI003021000 ... SOLCI003021100, SOLCI003021200, SOLCI005070900, SOLCI005303300, SOLCI005739400
Solanaceae	Solanum pennellii	8	gene-LOC107005518, gene-LOC107011439, gene-LOC107020584 ... gene-LOC107024203, gene-LOC107029424, gene-LOC107031303, gene-LOC107031837, gene-LOC107032216
Tamaricaceae	Reaumuria soongarica	6	STRG.14628_chr08_+, STRG.29964_chr10_+, STRG.7922_chr04_- ... STRG.9314_chr03_+, gene_13703, gene_15947
Tamaricaceae	Tamarix chinensis	7	TC01G1788, TC03G0354, TC04G1310, TC05G1452, TC06G1443 ... TC09G1447, TC11G1095
Zosteraceae	Zostera marina	6	Zosma01g05360.v3.1, Zosma01g27850.v3.1, Zosma02g23660.v3.1 ... Zosma03g19970.v3.1, Zosma03g28390.v3.1, Zosma06g06630.v3.1