Basic Information
Locus ID:
nbisL1-mrna-5705
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Mitogen-activated protein kinase kinase kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7002441 | 7005563 | + | nbisL1-mrna-5705 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.75 | 111,509.92 Da | 42.92 | 88.99 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08323 | Starch synthase catalytic domain | 645 | 693 | 1.9E-7 | IPR013534 |
| Pfam | PF00069 | Protein kinase domain | 851 | 964 | 3.9E-17 | IPR000719 |
| Pfam | PF00225 | Kinesin motor domain | 962 | 1003 | 3.1E-9 | IPR001752 |
| SUPERFAMILY | SSF56300 | Metallo-dependent phosphatases | 548 | 652 | 1.29E-13 | IPR029052 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 962 | 1003 | 5.31E-9 | IPR027417 |
| SUPERFAMILY | SSF111331 | NAD kinase/diacylglycerol kinase-like | 108 | 286 | 2.29E-14 | IPR016064 |
| SUPERFAMILY | SSF52047 | RNI-like | 414 | 507 | 5.3E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 836 | 964 | 3.32E-23 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 351 | 543 | 4.3E-6 | IPR032675 |
| Gene3D | G3DSA:3.60.21.10 | - | 544 | 666 | 9.6E-30 | IPR029052 |
| Gene3D | G3DSA:1.20.58.1980 | - | 965 | 1003 | 1.2E-10 | - |
| Gene3D | G3DSA:2.60.200.30 | - | 153 | 294 | 7.2E-15 | IPR017437 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 847 | 964 | 1.2E-21 | - |
| SMART | SM00220 | serkin_6 | 850 | 1002 | 9.6E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 850 | 1003 | 17.064697 | IPR000719 |
| ProSiteProfiles | PS50067 | Kinesin motor domain profile. | 962 | 1003 | 12.64672 | IPR001752 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 856 | 879 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 796 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66850.2 | - | 0 |
| RefSeq | XP_040964436.1 | mitogen-activated protein kinase kinase kinase 5-like isoform X2 [Gossypium hirsutum] | 0 |
| Q9C5H5 | Mitogen-activated protein kinase kinase kinase 5 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2I7D9 | Protein kinase domain-containing protein OS=Gossypium tomentosum OX=34277 GN=ES332_D12G079500v1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21204 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7571 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah007598, Ah007860 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g084970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19090, Sbi_jg37515 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5357 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00026889 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl20570, Sgl21936, Sgl25953, Sgl27212 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009491, gene:ENSEOMG00000028643 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4BG0017620, CQ.Regalona.r1.4BG0017640 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30163090 |
| Apiaceae | Apium graveolens | 1 | Ag2G00045 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G002520 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708952 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3480.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri7G03611 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G78590.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018897m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g33680.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g058150.2N, BniB05g074490.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G0900 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1024 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g04200 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g35650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5705, nbisL1-mrna-9273 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1384 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00009431 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G35534 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1655, BH03.1806, CH03.1972 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0532900, gene-QOZ80_6BG0486420 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0474800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_004649 |
| Poaceae | Oryza coarctata | 2 | Oco17G003030, Oco18G002910 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g17680.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G158500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702575 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G011720, Chr11G010590 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG030270, gene_TRIDC5BG031970 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G186600.1, TraesCS5B02G185000.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb098430_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-31039 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30192 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG25.1345 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g17590 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2353 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10482 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5089 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1386 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001372 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1793 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22379 |
| Salicaceae | Populus euphratica | 2 | populus_peu17721, populus_peu17730 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617702 |
| Solanaceae | Solanum chilense | 1 | SOLCI000985000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024303 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6947 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0048 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25820.v3.1 |