Basic Information
Locus ID:
nbisL1-mrna-5699
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
CDPK-related protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 4089659 | 4090234 | + | nbisL1-mrna-5699 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 20,358.06 Da | 48.97 | 64.03 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 140 | 186 | 1.11E-6 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 124 | 191 | 1.2E-7 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 148 | 191 | 8.527762 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 154 | 180 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 78 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49370.1 | Calcium-dependent protein kinase (CDPK) family protein. | 0 |
| RefSeq | XP_011043716.1 | PREDICTED: CDPK-related kinase 4-like [Populus euphratica] | 0 |
| Q9SG12 | CDPK-related kinase 6 OS=Arabidopsis thaliana OX=3702 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A836XV14 | CDPK-related kinase OS=Salix suchowensis OX=1278906 GN=IMY05_015G0004700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah026154 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000031586 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G001000 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr12G025550, Chr20G005450 |
| Poaceae | Thinopyrum elongatum | 6 | Tel3E01G186100, Tel3E01G532600, Tel3E01G837000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG076670 |
| Poaceae | Zea mays | 3 | Zm00001eb092830_P001, Zm00001eb180840_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-54473, nbis-gene-9572 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12207 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5699 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011417 |
| Salicaceae | Populus euphratica | 1 | populus_peu14330 |