Basic Information
Locus ID:
nbisL1-mrna-5695
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 6903932 | 6904854 | + | nbisL1-mrna-5695 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.54 | 27,028.33 Da | 40.23 | 96.15 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 34 | 124 | 6.3E-7 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 7 | 123 | 7.72E-23 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 12 | 98 | 7.7E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 100 | 209 | 4.8E-7 | - |
| SMART | SM00219 | tyrkin_6 | 28 | 192 | 0.0053 | IPR020635 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10530.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_012460847.2 | L-type lectin-domain containing receptor kinase IX.1 [Gossypium raimondii] | 0 |
| Q9LXA5 | L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana OX=3702 GN=LECRK91 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J9B1V2 | non-specific serine/threonine protein kinase (Fragment) OS=Gossypium laxum OX=34288 GN=Golax_025963 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg265, jg28762, jg36600 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22847 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011872 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 4 | nbisL1-mrna-5692, nbisL1-mrna-5695, nbisL1-mrna-5699 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0199250.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G012380 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G1011800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC4BG055090 |
| Poaceae | Zea mays | 1 | Zm00001eb217820_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-58734, nbis-gene-58813 |