Basic Information
Locus ID:
nbisL1-mrna-5692
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Short Name:
CIPK3
Description:
Non-specific serine threonine protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 3831348 | 3843634 | - | nbisL1-mrna-5692 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 83,467.85 Da | 43.45 | 82.16 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12195 | CIPK_C | 312 | 421 | 1.25067E-48 | - |
| CDD | cd14663 | STKc_SnRK3 | 12 | 267 | 4.45029E-168 | - |
| CDD | cd06135 | Orn | 553 | 725 | 1.5956E-93 | IPR022894 |
| Pfam | PF03822 | NAF domain | 308 | 367 | 2.2E-22 | IPR004041 |
| Pfam | PF00929 | Exonuclease | 554 | 716 | 1.8E-30 | IPR013520 |
| Pfam | PF00069 | Protein kinase domain | 13 | 268 | 1.0E-72 | IPR000719 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 550 | 725 | 4.5E-39 | IPR012337 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 295 | 4.05E-92 | IPR011009 |
| Gene3D | G3DSA:3.30.310.80 | Kinase associated domain 1, KA1 | 305 | 430 | 4.7E-55 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 93 | 276 | 5.3E-60 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 547 | 729 | 1.1E-69 | IPR036397 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 3 | 92 | 2.3E-32 | - |
| SMART | SM00220 | serkin_6 | 13 | 268 | 2.1E-107 | IPR000719 |
| SMART | SM00479 | exoiiiendus | 552 | 726 | 6.1E-23 | IPR013520 |
| ProSiteProfiles | PS50816 | NAF domain profile. | 306 | 330 | 12.438233 | IPR018451 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 13 | 268 | 52.131153 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 19 | 42 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 132 | 144 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 543 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04068 (FoxO signaling pathway)
map04068 (FoxO signaling pathway)
ko04140 (Autophagy - animal)
map04140 (Autophagy - animal)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04211 (Longevity regulating pathway)
map04211 (Longevity regulating pathway)
ko04213 (Longevity regulating pathway - multiple species)
map04213 (Longevity regulating pathway - multiple species)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26980.3 | CBL-interacting protein kinase 3. encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers. | 0 |
| RefSeq | XP_020536180.1 | CBL-interacting serine/threonine-protein kinase 3 isoform X4 [Jatropha curcas] | 0 |
| Q2QY53 | CBL-interacting protein kinase 32 OS=Oryza sativa subsp. japonica OX=39947 GN=CIPK32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2MGM5 | non-specific serine/threonine protein kinase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg35690, jg582 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24904 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah025996 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g141200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12764, Sbi_jg53134 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8748 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018949 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl34107, Sgl34335, Sgl39735 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001765, gene:ENSEOMG00000003310 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0015380, CQ.Regalona.r1.6BG0016220 |
| Apiaceae | Apium graveolens | 1 | Ag2G01225 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G009340 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103701944, gene-LOC103719005 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2914.V1.1, AsparagusV1_01.2916.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G28359, Ftri12G04113 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G26970.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002092m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g08380.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g045590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0670 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0681 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12670 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0227s00021.v1.0, Dusal.3222s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06670 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2321 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.47 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00025406, Pov_00025413, Pov_00025514 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G13538, Lb6G30979, Lb6G30986 |
| Poaceae | Echinochloa crus-galli | 5 | AH09.470, BH07.1694, BH09.512, CH07.1526, CH09.562 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0130410, gene-QOZ80_2BG0185620 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0159190.3, HORVU.MOREX.r3.6HG0631340.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022655, gene-QYE76_043368 |
| Poaceae | Oryza coarctata | 3 | Oco03G009800, Oco04G010120, Oco08G002930 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g26660.1, LOC_Os04g23830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G015300 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0303146, Pt_Chr0303198, Pt_Chr0404811, Pt_Chr0405866 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr09G016520, Chr13G013310, Chr25G013660, Chr30G013450 |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G491200, Tel6E01G735200, Tel6E01G739000 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG039170, gene_TRIDC2BG042170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G272100.1, TraesCS2B02G290300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb240820_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19053, nbis-gene-53023 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16303, Zma_g19438 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG03.89, evm.TU.LG13.607, evm.TU.LG21.300 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g26900 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.451, evm.TU.Scaffold_13_RagTag.621 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24298, nbisL1-mrna-30447 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14502 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19712 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000015l.346, evm.TU.utg000015l.347 ... |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015792, Maker00018113 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-4267, nbisL1-mrna-5692 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15171 |
| Salicaceae | Populus euphratica | 2 | populus_peu02365, populus_peu02415 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631610 |
| Solanaceae | Solanum chilense | 2 | SOLCI005024200, SOLCI007263400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107021618, gene-LOC107031283 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.22947_chr05_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2690 |
| Zosteraceae | Zostera marina | 1 | Zosma01g39180.v3.1 |