Basic Information
Locus ID:
nbisL1-mrna-5678
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Lymphoid organ expressed yellow head virus receptor protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 1576601 | 1581032 | - | nbisL1-mrna-5678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 53,975.43 Da | 46.54 | 61.79 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06886 | Targeting protein for Xklp2 (TPX2) domain | 271 | 354 | 4.8E-22 | IPR027329 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 169 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 321 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 299 | 481 | - | - |
| Coils | Coil | Coil | 286 | 321 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35880.1 | TPX2 (targeting protein for Xklp2) protein family. | 0 |
| RefSeq | XP_021657084.1 | protein WVD2-like 4 isoform X6 [Hevea brasiliensis] | 0 |
| Q9SJ62 | Protein WVD2-like 4 OS=Arabidopsis thaliana OX=3702 GN=WDL4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2LLE3 | Uncharacterized protein LOC105138210 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology