Basic Information
Locus ID:
nbisL1-mrna-5668
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 1505805 | 1507366 | - | nbisL1-mrna-5668 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 46,282.42 Da | 42.68 | 76.35 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 218 | 253 | 1.6E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 388 | 0.031 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 136 | 194 | 2.4E-7 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 270 | 303 | 0.039 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 389 | 1.83E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 391 | 6.7E-117 | IPR015943 |
| SMART | SM00320 | WD40_4 | 172 | 208 | 1.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 130 | 169 | 3.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 346 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 1.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 84 | 125 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 262 | 303 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 388 | 1.6E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 137 | 169 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 221 | 253 | 13.081652 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 356 | 389 | 12.446706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 221 | 253 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 137 | 178 | 12.279615 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 356 | 389 | 10.363778 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 375 | 389 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_006429995.1 | cell division cycle 20.2, cofactor of APC complex [Citrus clementina] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | V4SW50 | ANAPC4_WD40 domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10011710mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology