Basic Information
Locus ID:
nbisL1-mrna-5652
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 1413954 | 1414985 | + | nbisL1-mrna-5652 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 38,370.85 Da | 43.37 | 76.65 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 12 | 51 | 1.7E-5 | IPR001810 |
| Pfam | PF01344 | Kelch motif | 163 | 208 | 1.1E-8 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 120 | 160 | 1.5E-6 | IPR006652 |
| SUPERFAMILY | SSF117281 | Kelch motif | 89 | 273 | 2.48E-34 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 54 | 2.09E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 48 | 1.4E-5 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 49 | 283 | 3.3E-33 | IPR015915 |
| SMART | SM00612 | kelc_smart | 174 | 221 | 9.4E-5 | IPR006652 |
| SMART | SM00256 | fbox_2 | 14 | 54 | 1.3E-5 | IPR001810 |
| SMART | SM00612 | kelc_smart | 125 | 173 | 7.1E-5 | IPR006652 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 55 | 8.994076 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44130.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_011047101.1 | PREDICTED: F-box/kelch-repeat protein At1g15670-like [Populus euphratica] | 0 |
| O80582 | F-box/kelch-repeat protein At2g44130 OS=Arabidopsis thaliana OX=3702 GN=At2g44130 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2P2L2B4 | F-box/kelch-repeat protein At1g15670-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology