Basic Information
Locus ID:
nbisL1-mrna-5641
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Short Name:
GLT1
Description:
glutamate synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 3607856 | 3616511 | - | nbisL1-mrna-5641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 98,563.52 Da | 33.10 | 82.09 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00982 | gltB_C | 50 | 299 | 1.00645E-158 | IPR002489 |
| Pfam | PF14691 | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster | 396 | 506 | 9.4E-22 | IPR028261 |
| Pfam | PF01493 | GXGXG motif | 73 | 259 | 2.1E-86 | IPR002489 |
| Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 519 | 845 | 7.5E-25 | IPR023753 |
| SUPERFAMILY | SSF46548 | alpha-helical ferredoxin | 372 | 529 | 5.75E-38 | - |
| SUPERFAMILY | SSF69336 | Alpha subunit of glutamate synthase, C-terminal domain | 41 | 306 | 2.35E-99 | IPR036485 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 516 | 857 | 1.28E-60 | IPR036188 |
| Gene3D | G3DSA:1.10.1060.10 | - | 351 | 518 | 1.3E-42 | IPR009051 |
| Gene3D | G3DSA:3.50.50.60 | - | 628 | 789 | 1.4E-32 | IPR036188 |
| Gene3D | G3DSA:3.40.50.720 | - | 519 | 627 | 1.6E-15 | - |
| Gene3D | G3DSA:2.160.20.60 | - | 29 | 304 | 3.4E-112 | IPR036485 |
| TIGRFAM | TIGR01317 | GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit | 374 | 860 | 4.2E-225 | IPR006005 |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 543 | 556 | 6.8E-24 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 664 | 678 | 6.8E-24 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 520 | 542 | 6.8E-24 | - |
| PRINTS | PR00419 | Adrenodoxin reductase family signature | 586 | 596 | 6.8E-24 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 867 | 893 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 869 | 885 | - | - |
| Coils | Coil | Coil | 307 | 341 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko00250 (Alanine, aspartate and glutamate metabolism)
map00250 (Alanine, aspartate and glutamate metabolism)
ko00910 (Nitrogen metabolism)
map00910 (Nitrogen metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53460.1 | NADH-dependent glutamate synthase 1. NADH-dependent glutamate synthase | 0 |
| RefSeq | XP_021682260.1 | glutamate synthase 1 [NADH], chloroplastic isoform X1 [Hevea brasiliensis] | 0 |
| Q03460 | Glutamate synthase [NADH], amyloplastic OS=Medicago sativa OX=3879 PE=1 SV=1 | 0 | |
| TrEMBL | B9RII5 | glutamate synthase (NADH) OS=Ricinus communis OX=3988 GN=RCOM_1579610 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13893, jg2196 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3295 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018647 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052140 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15107, Sbi_jg55939 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26420 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020044 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01374, Sgl01440, Sgl01441, Sgl06449, Sgl06528 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000510, gene:ENSEOMG00000031859 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0004880, CQ.Regalona.r1.3BG0004920 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30185180 |
| Apiaceae | Apium graveolens | 2 | Ag10G02525, AgUnG00467 |
| Arecaceae | Cocos nucifera | 2 | COCNU_03G013130, scaffold000561G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708325, gene-LOC103713334 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2833.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G12439 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G53460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012414m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g15593.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g016600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1606 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1742 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g12650, gene.Cymno12g01560 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0052s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g24920, gene.Thate09g14990 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2897 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00041146 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37740, Lb7G32942 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2769, AH05.1457, BH02.2852, BH05.1626, CH02.3687 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0028780, gene-QOZ80_1BG0079010 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0280530.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_054594, gene-QYE76_054602 |
| Poaceae | Oryza coarctata | 4 | Oco01G017400, Oco02G017650, Oco09G016320, Oco10G016130 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g48960.1, LOC_Os05g48200.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G233100, gene-BS78_03G236800 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602367 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G012560, Chr03G013590, Chr08G013750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G442300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG039670, gene_TRIDC3BG044820 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G266300.1, TraesCS3B02G299800.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb156610_P002, Zm00001eb295220_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-12580, nbis-gene-26118 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10886, Zma_g8437 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG06.1967 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g13790, gene.Posoc09g09130 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.622, evm.TU.Scaffold_2_RagTag.1648 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3559, nbisL1-mrna-7507 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2555, nbisL1-mrna-921 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14013, nbisL1-mrna-5641 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000009l.314, evm.TU.utg000012l.386 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005974, Maker00011451 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-2744, nbisL1-mrna-8412 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16769, nbisL1-mrna-743 |
| Salicaceae | Populus euphratica | 3 | populus_peu28067, populus_peu29502, populus_peu29503 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632063 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013700 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_5260 |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G1506 |
| Zosteraceae | Zostera marina | 2 | Zosma01g06270.v3.1, Zosma01g22390.v3.1 |