Basic Information
Locus ID:
nbisL1-mrna-5633
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 1301324 | 1305620 | - | nbisL1-mrna-5633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.04 | 34,864.59 Da | 51.13 | 72.74 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 173 | 301 | 9.73438E-61 | - |
| CDD | cd16571 | RING-HC_SIAHs | 57 | 94 | 3.37297E-13 | - |
| Pfam | PF03145 | Seven in absentia protein family | 101 | 300 | 3.2E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 112 | 304 | 5.49E-46 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 101 | 3.42E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 166 | 4.1E-15 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 113 | 1.3E-5 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 167 | 300 | 5.0E-38 | IPR008974 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 112 | 172 | 13.903936 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 59 | 95 | 8.697757 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58040.1 | seven in absentia of Arabidopsis 2. Encodes a RING finger domain containing protein that interacts with AtRAP2.2. | 0 |
| RefSeq | XP_021623564.1 | E3 ubiquitin-protein ligase SINAT2 isoform X2 [Manihot esculenta] | 0 |
| Q9M2P4 | E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana OX=3702 GN=SINAT2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2M2C0 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology