Basic Information
Locus ID:
nbisL1-mrna-5631
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 4442006 | 4446101 | - | nbisL1-mrna-5631 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.27 | 56,115.60 Da | 61.67 | 81.71 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 261 | 309 | 3.79009E-14 | - |
| Pfam | PF12906 | RING-variant domain | 261 | 308 | 3.1E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 312 | 5.89E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 316 | 1.5E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 260 | 309 | 1.3E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 253 | 315 | 18.4417 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 509 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 252 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021657114.1 | uncharacterized protein LOC110647532 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2L5T8 | RING-CH-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology