Basic Information
Locus ID:
nbisL1-mrna-5629
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 6360359 | 6363705 | - | nbisL1-mrna-5629 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 68,295.74 Da | 61.00 | 65.53 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 275 | 317 | 1.1E-5 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 197 | 259 | 7.8E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 121 | 209 | 2.78E-19 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 267 | 324 | 6.01E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 265 | 3.06E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 211 | 2.0E-20 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 255 | 503 | 7.4E-61 | - |
| SMART | SM00647 | ibrneu5 | 197 | 259 | 2.0E-22 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 267 | 332 | 0.012 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 122 | 336 | 46.249863 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 126 | 174 | 9.848491 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 558 | 581 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16090.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_012458089.1 | probable E3 ubiquitin-protein ligase ARI2 isoform X1 [Gossypium raimondii] | 0 |
| Q84RR2 | Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana OX=3702 GN=ARI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D2V619 | RBR-type E3 ubiquitin transferase OS=Gossypium raimondii OX=29730 GN=B456_012G163300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1027, jg26226, jg28736 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_776 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah010307, Ah010309, Ah037106 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g013200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39498, Sbi_jg54838 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14833 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00021749, GOSA_00022405 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12871, Sgl18113 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000012948, gene:ENSEOMG00000015881 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0019850, CQ.Regalona.r1.1BG0005220 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30046010, pistato.v30113730 |
| Apiaceae | Apium graveolens | 3 | Ag1G00912, Ag4G02775, Ag9G00120 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G000220, COCNU_06G019900 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103707484, gene-LOC103720788, gene-LOC103720794 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.810.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri14G13598, Ftri16G30539, Ftri7G28213 |
| Brassicaceae | Arabidopsis thaliana | 4 | AT2G16090.1, AT3G27710.1, AT3G27720.1, AT4G34370.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10005453m.g.v1.0, Thhalv10022996m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g16830.v2.2, Sp3g29350.v2.2, Sp7g32160.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g063270.2N, BniB04g007150.2N, BniB05g003940.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0040 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G1777, Cgl09G0046 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08940 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10830 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5629 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.89 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007552 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15806 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4458, CH01.5068, Contig192.100 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0239580, gene-QOZ80_3BG0288440 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0394930.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_069782 |
| Poaceae | Oryza coarctata | 2 | Oco05G007370, Oco06G007630 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g13100.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G431600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0101832 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G028360, Chr04G000930, Chr07G000960, Chr12G011090 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G409300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG009110, gene_TRIDC4BG041790 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G061500.1, TraesCS4B02G236900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb009370_P002, Zm00001eb399570_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2413, nbis-gene-4015 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g4112 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.905, evm.TU.LG23.112 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g18940 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_1_RagTag.2163, evm.TU.Scaffold_2_RagTag.251 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-19096, nbisL1-mrna-4949, nbisL1-mrna-5973 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18719, nbisL1-mrna-761 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-21865, nbisL1-mrna-9876 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.535, evm.TU.utg000009l.798 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00004894, Maker00012058 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14723, nbisL1-mrna-5842 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12467, nbisL1-mrna-1292 |
| Salicaceae | Populus euphratica | 1 | populus_peu36430 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132599135, gene-LOC132604117, gene-LOC132627948 |
| Solanaceae | Solanum chilense | 3 | SOLCI003002400, SOLCI003581900, SOLCI007325000 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107005315, gene-LOC107008440, gene-LOC107017931 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.10043_chr06_+, gene_1925, gene_7808 |
| Tamaricaceae | Tamarix chinensis | 3 | TC04G2315, TC09G1199, TC10G0527 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23110.v3.1 |