halophFGD

Basic Information

Locus ID: nbisL1-mrna-5622

Species & Taxonomic ID: Hibiscus hamabo Siebold & Zucc. & 1841

Genome Assembly:

Description: C1 domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2	6308000	6310048	-	nbisL1-mrna-5622

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.01	78,664.86 Da	46.60	70.20	-0.32

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03107	C1 domain	564	612	1.0E-6	IPR004146
Pfam	PF03107	C1 domain	6	53	3.7E-9	IPR004146
Pfam	PF03107	C1 domain	64	109	5.6E-11	IPR004146
Pfam	PF03107	C1 domain	239	281	8.3E-7	IPR004146
Pfam	PF03107	C1 domain	395	441	1.1E-9	IPR004146
Pfam	PF03107	C1 domain	509	553	8.8E-9	IPR004146
SUPERFAMILY	SSF57889	Cysteine-rich domain	206	294	1.64E-18	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	57	114	1.17E-14	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	165	224	5.13E-9	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	536	620	1.94E-17	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	388	454	4.84E-15	-
SUPERFAMILY	SSF57889	Cysteine-rich domain	2	57	1.44E-9	-
Gene3D	G3DSA:3.30.60.20	-	410	443	1.0E-5	-
SMART	SM00109	c1_12	69	122	0.34	IPR002219
SMART	SM00109	c1_12	396	445	0.097	IPR002219
SMART	SM00109	c1_12	10	58	0.25	IPR002219
SMART	SM00109	c1_12	242	286	0.46	IPR002219
SMART	SM00249	PHD_3	254	317	5.1	IPR001965
SMART	SM00109	c1_12	511	559	0.34	IPR002219
SMART	SM00249	PHD_3	583	647	1.4	IPR001965
ProSiteProfiles	PS50081	Zinc finger phorbol-ester/DAG-type profile.	392	448	8.1457	IPR002219

Gene Ontology

Biological Process:

GO:0035556 (intracellular signal transduction)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G17960.1	Cysteine/Histidine-rich C1 domain family protein.
RefSeq	XP_039054803.1	uncharacterized protein LOC120197280 [Hibiscus syriacus]
TrEMBL	A0A6A2WE97	Pentatricopeptide repeat superfamily protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00117048pilonHSYRG00178 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg35663, jg8188, jg8412, jg8450, jg8451, jg8457
Apiaceae	Apium graveolens	5	Ag10G00884, Ag1G00153, Ag1G00315, Ag8G00374, Ag8G01874
Asteraceae	Flaveria trinervia	12	Ftri10G04197, Ftri15G15158, Ftri15G19898, Ftri1G06516 ... Ftri1G15699, Ftri1G31999, Ftri3G08687, Ftri3G10138, Ftri6G30596, Ftri8G05177, Ftri8G13431, Ftri8G27137
Brassicaceae	Arabidopsis thaliana	35	AT1G58037.1, AT2G04680.1, AT2G19650.1, AT2G19660.1 ... AT2G43220.1, AT3G06990.1, AT3G07000.1, AT3G45840.1, AT3G46800.1, AT3G46810.1, AT3G48400.1, AT4G01350.1, AT4G01740.1, AT4G01760.1, AT4G01910.1, AT4G01920.1, AT4G01925.1, AT4G01930.1, AT4G02180.1, AT4G02190.1, AT4G09690.1, AT4G11390.1, AT4G11540.1, AT4G11550.1, AT4G13992.1, AT4G16015.1, AT5G16430.1, AT5G22355.1, AT5G26190.1, AT5G37620.1, AT5G40320.1, AT5G45730.1, AT5G59920.1, AT5G59930.1, AT5G59940.1
Brassicaceae	Eutrema salsugineum	34	Thhalv10001923m.g.v1.0, Thhalv10002199m.g.v1.0 ... Thhalv10002432m.g.v1.0, Thhalv10003740m.g.v1.0, Thhalv10003743m.g.v1.0, Thhalv10003754m.g.v1.0, Thhalv10003760m.g.v1.0, Thhalv10003761m.g.v1.0, Thhalv10005293m.g.v1.0, Thhalv10005296m.g.v1.0, Thhalv10005411m.g.v1.0, Thhalv10007210m.g.v1.0, Thhalv10009528m.g.v1.0, Thhalv10009889m.g.v1.0, Thhalv10012095m.g.v1.0, Thhalv10012175m.g.v1.0, Thhalv10012196m.g.v1.0, Thhalv10012912m.g.v1.0, Thhalv10012915m.g.v1.0, Thhalv10016311m.g.v1.0, Thhalv10022573m.g.v1.0, Thhalv10023179m.g.v1.0, Thhalv10024646m.g.v1.0, Thhalv10027008m.g.v1.0, Thhalv10027103m.g.v1.0, Thhalv10027671m.g.v1.0, Thhalv10028079m.g.v1.0, Thhalv10028133m.g.v1.0, Thhalv10028236m.g.v1.0, Thhalv10028242m.g.v1.0, Thhalv10028254m.g.v1.0, Thhalv10028534m.g.v1.0, Thhalv10029207m.g.v1.0, Thhalv10029489m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp2g06340.v2.2, Sp5g15690.v2.2, Sp7g01400.v2.2 ... Sp7g01410.v2.2, Sp7g16340.v2.2
Brassicaceae	Brassica nigra	39	BniB01g002950.2N, BniB01g004980.2N, BniB01g026110.2N ... BniB01g026650.2N, BniB01g058940.2N, BniB01g058950.2N, BniB01g058960.2N, BniB01g058970.2N, BniB02g015730.2N, BniB02g039660.2N, BniB02g042710.2N, BniB02g050650.2N, BniB02g051320.2N, BniB02g067650.2N, BniB02g067710.2N, BniB03g040730.2N, BniB04g024850.2N, BniB04g024860.2N, BniB05g007940.2N, BniB05g017310.2N, BniB05g018620.2N, BniB05g020320.2N, BniB06g008470.2N, BniB06g023060.2N, BniB07g033480.2N, BniB07g033740.2N, BniB07g058140.2N, BniB07g060150.2N, BniB07g062010.2N, BniB07g062030.2N, BniB08g009490.2N, BniB08g012030.2N, BniB08g012050.2N, BniB08g022020.2N, BniB08g038300.2N, BniB08g044670.2N, BniB08g044680.2N, BniB08g044720.2N, BniB08g045080.2N
Casuarinaceae	Casuarina equisetifolia	17	Ceq01G2298, Ceq02G1953, Ceq03G0083, Ceq03G0113, Ceq03G0190 ... Ceq04G0075, Ceq04G0556, Ceq04G2464, Ceq04G2468, Ceq05G2487, Ceq05G2489, Ceq06G0228, Ceq07G2160, Ceq07G2257, Ceq08G0108, Ceq08G0138, Ceq09G0291
Casuarinaceae	Casuarina glauca	23	Cgl01G2601, Cgl01G2602, Cgl01G2604, Cgl03G0217, Cgl03G0218 ... Cgl04G0632, Cgl04G0634, Cgl04G0672, Cgl04G2695, Cgl05G2333, Cgl05G2698, Cgl07G1743, Cgl07G2340, Cgl07G2349, Cgl07G2372, Cgl07G2373, Cgl07G2522, Cgl08G0162, Cgl08G0163, Cgl08G0167, Cgl08G2652, Cgl09G0326, Cgl09G0327
Malvaceae	Hibiscus hamabo Siebold & Zucc.	6	nbisL1-mrna-3679, nbisL1-mrna-5622, nbisL1-mrna-8116 ... nbisL1-mrna-8118, nbisL1-mrna-8119, nbisL1-mrna-8190
Plumbaginaceae	Limonium bicolor	1	Lb3G17998
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17876
Salicaceae	Populus euphratica	4	populus_peu26078, populus_peu26197, populus_peu26198 ... populus_peu26199