Basic Information
Locus ID:
nbisL1-mrna-5610
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
Ethylene-overproduction protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 3374708 | 3379443 | + | nbisL1-mrna-5610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 106,102.45 Da | 47.92 | 88.13 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13181 | Tetratricopeptide repeat | 758 | 786 | 0.079 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 521 | 885 | 1.14E-17 | IPR011990 |
| SUPERFAMILY | SSF54695 | POZ domain | 223 | 323 | 3.85E-8 | IPR011333 |
| SUPERFAMILY | SSF48439 | Protein prenylyltransferase | 510 | 748 | 7.59E-6 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 633 | 834 | 5.5E-11 | IPR011990 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 218 | 366 | 2.6E-12 | IPR011333 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 835 | 938 | 1.5E-8 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 411 | 595 | 2.7E-10 | IPR011990 |
| SMART | SM00028 | tpr_5 | 683 | 716 | 460.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 757 | 790 | 0.28 | IPR019734 |
| SMART | SM00028 | tpr_5 | 886 | 919 | 64.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 557 | 590 | 2.1 | IPR019734 |
| SMART | SM00225 | BTB_4 | 227 | 327 | 8.1E-5 | IPR000210 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 757 | 790 | 8.1129 | IPR019734 |
| Coils | Coil | Coil | 802 | 829 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G51770.1 | tetratricopeptide repeat (TPR)-containing protein. Encodes a negative regulator of 1-aminocyclopropane-1-carboxylic acid synthase5(ACS5), which catalyze the rate-limiting step in ethylene biosynthesis. ETO1 directly interacts with ACS5 and inhibits its enzyme activity and targets it for degradation via proteasome-dependent pathway. It also interacts with CUL3 (a component of ubiquitin ligase complexes). eto1 (and eto3) mutations elevate ethylene biosynthesis by affecting the posttranscriptional regulation of ACS | 0 |
| RefSeq | XP_021622933.1 | ethylene-overproduction protein 1 [Manihot esculenta] | 0 |
| O65020 | Ethylene-overproduction protein 1 OS=Arabidopsis thaliana OX=3702 GN=ETO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2KZT0 | Uncharacterized protein MANES_09G109400 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32480 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15223 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003273 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g103120 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4808, Sbi_jg7275 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12734 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001451 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51665, Sgl56974 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004208, gene:ENSEOMG00000023479 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0010520, CQ.Regalona.r1.5BG0011030 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30061070, pistato.v30267560 |
| Apiaceae | Apium graveolens | 1 | Ag2G01831 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G006310 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706721 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G25809, Ftri12G22421 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G51770.2, AT5G58550.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10010100m.g.v1.0, Thhalv10012604m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g20600.v2.2, Sp5g10500.v2.2, Sp6g20240.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g037950.2N, BniB02g074490.2N, BniB06g006360.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq08G0982, Ceq08G1837 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1000, Cgl08G1895 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g16870 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g32230, gene.Thate06g02770 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5512 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.969, evm.TU.LG09.1053 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002688, Pov_00016341 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G10681, Lb7G33968, Lb7G33977 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3973, BH01.4368, CH01.4607 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0244460, gene-QOZ80_3BG0283570 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0384400.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_008092, gene-QYE76_068726 |
| Poaceae | Oryza coarctata | 2 | Oco05G010770, Oco06G011000 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g28830.1, LOC_Os03g18360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G387800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0102434, Pt_Chr0102465 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G032160, Chr12G007460 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G343700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG015380, gene_TRIDC4BG033570 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G111500.1, TraesCS4B02G192300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb013600_P001, Zm00001eb396900_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-3604 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3828 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG03.443, evm.TU.LG04.2820, evm.TU.LG16.836 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g37450 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_12_RagTag.99, evm.TU.Scaffold_13_RagTag.956 ... |
| Rhizophoraceae | Carallia pectinifolia | 4 | nbisL1-mrna-24700, nbisL1-mrna-30059, nbisL1-mrna-4604 ... |
| Rhizophoraceae | Ceriops tagal | 4 | nbisL1-mrna-12897, nbisL1-mrna-1364, nbisL1-mrna-15494 ... |
| Rhizophoraceae | Ceriops zippeliana | 4 | nbisL1-mrna-16323, nbisL1-mrna-19406, nbisL1-mrna-3675 ... |
| Rhizophoraceae | Kandelia candel | 4 | evm.TU.utg000009l.998, evm.TU.utg000015l.568 ... |
| Rhizophoraceae | Kandelia obovata | 4 | Maker00006267, Maker00015658, Maker00017259, Maker00018123 |
| Rhizophoraceae | Rhizophora apiculata | 4 | nbisL1-mrna-2668, nbisL1-mrna-4473, nbisL1-mrna-4936 ... |
| Rhizophoraceae | Rhizophora mangle | 4 | nbisL1-mrna-11634, nbisL1-mrna-13784, nbisL1-mrna-16670 ... |
| Salicaceae | Populus euphratica | 3 | populus_peu01731, populus_peu11460, populus_peu36082 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132630903, gene-LOC132630950 |
| Solanaceae | Solanum chilense | 2 | SOLCI000749400, SOLCI001511200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002738, gene-LOC107031354 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_12187, gene_12260 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G2778, TC06G0264 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20720.v3.1 |