Basic Information
Locus ID:
nbisL1-mrna-5599
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Cell division cycle
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 3293915 | 3295938 | + | nbisL1-mrna-5599 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 50,924.42 Da | 53.34 | 73.41 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 147 | 431 | 9.22105E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 396 | 431 | 8.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 346 | 0.0062 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 180 | 236 | 8.4E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 295 | 1.3E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 141 | 431 | 3.43E-60 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 86 | 434 | 1.0E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 214 | 252 | 0.93 | IPR001680 |
| SMART | SM00320 | WD40_4 | 126 | 167 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 172 | 211 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 346 | 1.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 295 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 392 | 431 | 6.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 389 | 410.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 399 | 432 | 12.513543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 263 | 295 | 13.917108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 399 | 432 | 10.416506 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 179 | 211 | 8.597424 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 263 | 295 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 179 | 220 | 11.210233 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 418 | 432 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_021621334.1 | cell division cycle 20.1, cofactor of APC complex [Manihot esculenta] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VIE8 | ANAPC4_WD40 domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_08G164600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology