Basic Information
Locus ID:
nbisL1-mrna-5588
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 3225481 | 3235200 | - | nbisL1-mrna-5588 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 86,295.04 Da | 48.39 | 84.17 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 660 | 719 | 7.14922E-13 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 657 | 719 | 2.7E-8 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 246 | 359 | 2.0E-6 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 657 | 720 | 1.41E-13 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 385 | 5.32E-17 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 652 | 730 | 1.1E-11 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 129 | 386 | 4.2E-25 | IPR023214 |
| SMART | SM00577 | forpap2 | 193 | 369 | 4.0E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 656 | 720 | 8.5E-10 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 134 | 385 | 14.014194 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 655 | 721 | 13.664721 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 544 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_021622867.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Manihot esculenta] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2P2M1I3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology