Basic Information
Locus ID:
nbisL1-mrna-5573
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 4944799 | 4949458 | - | nbisL1-mrna-5573 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 72,765.24 Da | 41.71 | 97.29 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 262 | 304 | 5.49809E-28 | - |
| Pfam | PF04564 | U-box domain | 258 | 328 | 9.2E-22 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 550 | 589 | 2.5E-4 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 386 | 424 | 9.6E-11 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 468 | 506 | 4.6E-9 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 356 | 636 | 1.51E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 258 | 334 | 6.82E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 346 | 532 | 8.6E-38 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 533 | 652 | 6.8E-17 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 119 | 3.0E-10 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 258 | 331 | 5.2E-32 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 261 | 324 | 1.3E-36 | IPR003613 |
| SMART | SM00185 | arm_5 | 426 | 466 | 1.9 | IPR000225 |
| SMART | SM00185 | arm_5 | 467 | 507 | 0.0017 | IPR000225 |
| SMART | SM00185 | arm_5 | 549 | 589 | 9.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 385 | 425 | 9.4E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 508 | 548 | 18.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 591 | 631 | 290.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 519 | 561 | 9.4324 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 257 | 331 | 45.884411 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 478 | 520 | 8.5574 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 396 | 438 | 12.2324 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 660 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 633 | 659 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_012065019.1 | U-box domain-containing protein 13 [Jatropha curcas] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LYI5 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology