Basic Information
Locus ID:
nbisL1-mrna-5561
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002174F_pilon | 813053 | 817917 | - | nbisL1-mrna-5561 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 62,965.98 Da | 43.52 | 75.69 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 408 | 440 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 445 | 479 | 1.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 316 | 0.025 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 283 | 570 | 2.2E-46 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 247 | 271 | 1.96E-5 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 274 | 337 | 6.6E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 342 | 575 | 9.9E-39 | IPR015943 |
| SMART | SM00320 | WD40_4 | 530 | 567 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 356 | 395 | 9.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 440 | 8.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 280 | 316 | 0.11 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 247 | 272 | 1.9E-4 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 18 | 42 | 0.018 | IPR000571 |
| SMART | SM00320 | WD40_4 | 443 | 480 | 2.5E-7 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 246 | 273 | 12.577264 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 17 | 43 | 10.370826 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 410 | 443 | 10.68014 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 450 | 479 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 449 | 13.883689 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 479 | 10.675542 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 284 | 325 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 284 | 316 | 10.047417 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 427 | 441 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 303 | 317 | 3.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 467 | 481 | 3.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 427 | 441 | 3.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 73 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021687428.1 | zinc finger CCCH domain-containing protein 48-like isoform X4 [Hevea brasiliensis] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2LRG6 | Zinc finger CCCH domain-containing protein 63-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology