Basic Information
Locus ID:
nbisL1-mrna-5558
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 5105398 | 5107427 | + | nbisL1-mrna-5558 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 35,380.95 Da | 42.78 | 72.82 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 11 | 182 | 1.8E-78 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 1 | 106 | 3.5E-43 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 107 | 180 | 1.6E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 253 | 288 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 226 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_021642543.1 | ubiquitin fusion degradation protein 1 homolog [Hevea brasiliensis] | 0 |
| P70362 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Mus musculus OX=10090 GN=Ufd1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A067L4X4 | Ubiquitin fusion degradation protein 1 homolog OS=Jatropha curcas OX=180498 GN=JCGZ_02973 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology