Basic Information
Locus ID:
nbisL1-mrna-5502
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Short Name:
UBP6
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5490092 | 5496938 | + | nbisL1-mrna-5502 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 56,649.84 Da | 48.48 | 82.77 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16104 | Ubl_USP14_like | 25 | 98 | 1.36826E-41 | - |
| CDD | cd02657 | Peptidase_C19A | 128 | 489 | 4.83486E-134 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 128 | 473 | 3.8E-48 | IPR001394 |
| Pfam | PF00240 | Ubiquitin family | 38 | 96 | 6.9E-7 | IPR000626 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 126 | 489 | 7.26E-80 | IPR038765 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 25 | 113 | 1.31E-22 | IPR029071 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 122 | 500 | 6.9E-90 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 24 | 96 | 2.1E-29 | - |
| SMART | SM00213 | ubq_7 | 25 | 96 | 1.5E-11 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 25 | 94 | 12.291423 | IPR000626 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 127 | 498 | 36.512611 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 437 | 455 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 128 | 143 | - | IPR018200 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 51 | 76 | - | IPR019954 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 409 | 424 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51710.1 | ubiquitin-specific protease 6. Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin. | 0 |
| RefSeq | XP_016668906.1 | ubiquitin carboxyl-terminal hydrolase 6-like [Gossypium hirsutum] | 0 |
| Q949Y0 | Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana OX=3702 GN=UBP6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2P0F7 | Ubiquitin carboxyl-terminal hydrolase OS=Gossypium tomentosum OX=34277 GN=ES332_A09G098000v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18076 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26059 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033814 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20125, Sbi_jg44395 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17582 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00021384 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl63936, Sgl68425, Sgl68459 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019283, gene:ENSEOMG00000020096 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0009100, CQ.Regalona.r1.2BG0010340 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30116210 |
| Apiaceae | Apium graveolens | 2 | Ag5G00890, Ag6G01412 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G002340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712935 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2904.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G20259, Ftri1G33440 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G51710.1, AT3G21280.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011383m.g.v1.0, Thhalv10020636m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g38350.v2.2, Sp3g19320.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB04g058230.2N, BniB07g004080.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0893 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0907 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g03570 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0701s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g07440 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-4581, nbisL1-mrna-5502 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.22, evm.TU.LG10.250 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025793 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G36736, Lb3G18083, Lb3G18086 |
| Poaceae | Echinochloa crus-galli | 4 | AH02.2011, BH02.2058, BH02.2397, CH02.2232 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0020710, gene-QOZ80_1BG0070560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0266440.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053316 |
| Poaceae | Oryza coarctata | 2 | Oco01G012380, Oco02G012520 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g36930.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G162200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603032 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G017840, Chr03G008810, Chr05G016180, Chr08G009740 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G349000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG029400, gene_TRIDC3BG032970 |
| Poaceae | Triticum aestivum | 4 | TraesCS3A02G201000.1, TraesCS3B02G226300.4 ... |
| Poaceae | Zea mays | 2 | Zm00001eb162410_P002, Zm00001eb356540_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21442, nbis-gene-47353 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10462, Zma_g8047 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1610, evm.TU.LG15.1646 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21630 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1345 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27764, nbisL1-mrna-7070 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-15519, nbisL1-mrna-8074 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-8026, nbisL1-mrna-8775 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000004l.65, evm.TU.utg000023l.74 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003999, Maker00018915 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16444, nbisL1-mrna-7403 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-17925, nbisL1-mrna-24319 |
| Salicaceae | Populus euphratica | 2 | populus_peu02605, populus_peu12128 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603709, gene-LOC132632788 |
| Solanaceae | Solanum chilense | 1 | SOLCI004044400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007362 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10033 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G1782, TC10G2096 |
| Zosteraceae | Zostera marina | 1 | Zosma06g11350.v3.1 |