Basic Information
Locus ID:
nbisL1-mrna-549
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RIBOSOMAL protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000003F_pilon | 3183498 | 3183674 | - | nbisL1-mrna-549 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.53 | 6,858.16 Da | 30.43 | 60.52 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00471 | Ribosomal protein L33 | 12 | 56 | 1.4E-11 | IPR001705 |
| SUPERFAMILY | SSF57829 | Zn-binding ribosomal proteins | 4 | 56 | 2.62E-15 | IPR011332 |
| Gene3D | G3DSA:2.20.28.120 | Ribosomal protein L33 | 2 | 58 | 1.7E-23 | IPR038584 |
| TIGRFAM | TIGR01023 | rpmG_bact: ribosomal protein bL33 | 4 | 58 | 2.5E-19 | IPR001705 |
| ProSitePatterns | PS00582 | Ribosomal protein L33 signature. | 24 | 43 | - | IPR018264 |
| Hamap | MF_00294 | 50S ribosomal protein L33 [rpmG]. | 4 | 56 | 12.349731 | IPR001705 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06320.1 | Ribosomal protein L33 family protein. | 0 |
| RefSeq | XP_050218900.1 | uncharacterized protein LOC126669470 [Mercurialis annua] | 0 |
| B3CRY6 | Large ribosomal subunit protein bL33 OS=Orientia tsutsugamushi (strain Ikeda) OX=334380 GN=rpmG PE=3 SV=1 | 0 | |
| TrEMBL | A0A251JHW3 | 50S ribosomal protein L33 OS=Manihot esculenta OX=3983 GN=MANES_03G189700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12478 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g009630, BVRB_2g033650 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg2898 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1AG0012360, CQ.Regalona.r1.1BG0008740 ... |
| Apiaceae | Apium graveolens | 1 | Ag5G02453 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G009880 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G08483, Ftri15G04256, Ftri9G27875 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G06320.1, AT5G18790.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10015229m.g.v1.0, Thhalv10022246m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g05230.v2.2, Sp6g25600.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g043950.2N, BniB05g045020.2N, BniB08g009540.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1239 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1327 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g01320 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0393s00014.v1.0 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4168 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1562 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb7G34158 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g37884.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_09G200200, gene-BS78_10G075900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602707 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G017060, Chr12G004300, Chr12G004320, Chr19G003160 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G571500, Tel3E01G490700 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG049510, gene_TRIDC1BG056240 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G333400.1.cds1, TraesCS1B02G346800.1.cds1 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49981 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g26866, Zma_g28575, Zma_g3584 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g32080 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.567 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16033, nbisL1-mrna-21820 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2816 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-549, nbisL1-mrna-6250, nbisL1-mrna-7307 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.285, evm.TU.utg000011l.392 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00007939, Maker00012684 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19500, nbisL1-mrna-23393 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12764, nbisL1-mrna-3393 |
| Salicaceae | Populus euphratica | 1 | populus_peu00559 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132615651, gene-LOC132626872 |
| Solanaceae | Solanum chilense | 1 | SOLCI006205000 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107016225, gene-LOC107018215 |
| Tamaricaceae | Reaumuria soongarica | 3 | gene_15760, gene_2036, gene_9393 |
| Zosteraceae | Zostera marina | 1 | Zosma05g10940.v3.1 |