Basic Information
Locus ID:
nbisL1-mrna-5473
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 5740407 | 5749686 | + | nbisL1-mrna-5473 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.13 | 97,009.82 Da | 53.62 | 76.40 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 181 | 320 | 8.44331E-33 | - |
| CDD | cd00821 | PH | 21 | 120 | 2.83965E-12 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 619 | 699 | 2.1E-21 | IPR025757 |
| Pfam | PF00169 | PH domain | 20 | 124 | 2.8E-13 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 181 | 325 | 8.8E-31 | IPR000198 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 374 | 5.3E-34 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 11 | 125 | 5.48E-18 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 8 | 126 | 5.4E-18 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 149 | 374 | 3.8E-41 | IPR008936 |
| SMART | SM00233 | PH_update | 19 | 127 | 5.2E-16 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 178 | 369 | 1.0E-27 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.685 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 372 | 30.008038 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 770 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 429 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 442 | - | - |
| Coils | Coil | Coil | 829 | 856 | - | - |
| Coils | Coil | Coil | 584 | 604 | - | - |
| Coils | Coil | Coil | 609 | 643 | - | - |
| Coils | Coil | Coil | 668 | 702 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_021643720.1 | rho GTPase-activating protein 7-like isoform X1 [Hevea brasiliensis] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067LGF7 | Rho GTPase-activating protein 7-like OS=Jatropha curcas OX=180498 GN=JCGZ_22776 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology