Basic Information
Locus ID:
nbisL1-mrna-5460
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5115337 | 5121350 | + | nbisL1-mrna-5460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 58,060.38 Da | 47.71 | 84.88 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 330 | 486 | 1.01599E-86 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 5 | 99 | 1.1E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 329 | 410 | 1.5E-7 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 332 | 441 | 3.4E-8 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 412 | 487 | 1.3E-18 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 317 | 411 | 9.8E-29 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 4 | 118 | 2.3E-33 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 327 | - | - |
| Coils | Coil | Coil | 86 | 106 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G16144.1 | associated molecule with the SH3 domain of STAM 3. Encodes AMSH3, a deubiquitinating enzyme that hydrolyzes K48- and K63-linked ubiquitin chains in vitro. Required for intracellular trafficking and vacuole biogenesis. | 0 |
| RefSeq | XP_039025785.1 | AMSH-like ubiquitin thioesterase 3 [Hibiscus syriacus] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A3CPE4 | AMSH-like ubiquitin thioesterase 3 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002841pilonHSYRG00209 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology