Basic Information
Locus ID:
nbisL1-mrna-5457
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5089836 | 5098818 | + | nbisL1-mrna-5457 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.80 | 121,162.55 Da | 42.41 | 83.67 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 415 | 0.079 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 285 | 316 | 0.23 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 856 | 890 | 0.015 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 773 | 1063 | 2.09E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 287 | 589 | 8.61E-34 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 253 | 496 | 1.6E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 497 | 608 | 8.1E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 708 | 1023 | 1.6E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 808 | 848 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 851 | 890 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 764 | 805 | 92.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 417 | 458 | 0.12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 378 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 940 | 982 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 504 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 415 | 8.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 278 | 317 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 507 | 547 | 1.8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 858 | 893 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 858 | 899 | 13.048234 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 877 | 891 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1077 | 1100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1081 | 1100 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_017611233.1 | PREDICTED: topless-related protein 2-like [Gossypium arboreum] | 0 |
| Q9LRZ0 | Topless-related protein 2 OS=Arabidopsis thaliana OX=3702 GN=TPR2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6P4M485 | topless-related protein 2-like OS=Gossypium arboreum OX=29729 GN=LOC108456972 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology