Basic Information
Locus ID:
nbisL1-mrna-5446
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr03 | 2107945 | 2117565 | - | nbisL1-mrna-5446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 93,662.38 Da | 42.48 | 75.77 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 736 | 797 | 0.00382148 | - |
| Pfam | PF16135 | Tify domain binding domain | 447 | 494 | 1.9E-15 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 512 | 553 | 7.3E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 256 | 310 | 2.4E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 573 | 631 | 2.64E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 694 | 824 | 1.72E-9 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 499 | 553 | 9.26E-14 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 681 | 841 | 1.3E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 575 | 637 | 4.4E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 504 | 555 | 3.8E-16 | IPR013083 |
| SMART | SM00249 | PHD_3 | 511 | 552 | 3.0E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 578 | 635 | 0.0021 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 576 | 637 | 8.760201 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 684 | 844 | 10.275668 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 509 | 554 | 10.121901 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 579 | 634 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 512 | 551 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 42 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 130 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_021650718.1 | uncharacterized protein LOC110642847 [Hevea brasiliensis] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9VBC5 | PHD-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_09G088900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology