Basic Information
Locus ID:
nbisL1-mrna-5426
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Short Name:
OTC
Description:
Belongs to the ATCase OTCase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 5153042 | 5156776 | - | nbisL1-mrna-5426 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 35,983.04 Da | 34.43 | 87.36 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02729 | Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain | 24 | 165 | 2.9E-45 | IPR006132 |
| Pfam | PF00185 | Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain | 171 | 322 | 7.2E-55 | IPR006131 |
| SUPERFAMILY | SSF53671 | Aspartate/ornithine carbamoyltransferase | 23 | 325 | 5.11E-102 | IPR036901 |
| Gene3D | G3DSA:3.40.50.1370 | Aspartate/ornithine carbamoyltransferase | 26 | 320 | 1.9E-115 | IPR036901 |
| Gene3D | G3DSA:3.40.50.1370 | Aspartate/ornithine carbamoyltransferase | 155 | 311 | 1.9E-115 | IPR036901 |
| TIGRFAM | TIGR00658 | orni_carb_tr: ornithine carbamoyltransferase | 24 | 324 | 2.8E-112 | IPR002292 |
| PRINTS | PR00102 | Ornithine carbamoyltransferase signature | 303 | 314 | 3.8E-27 | IPR002292 |
| PRINTS | PR00102 | Ornithine carbamoyltransferase signature | 241 | 251 | 3.8E-27 | IPR002292 |
| PRINTS | PR00102 | Ornithine carbamoyltransferase signature | 101 | 114 | 3.8E-27 | IPR002292 |
| PRINTS | PR00100 | Aspartate/ornithine carbamoyltransferase superfamily signature | 70 | 89 | 3.2E-25 | IPR006130 |
| PRINTS | PR00102 | Ornithine carbamoyltransferase signature | 141 | 155 | 3.8E-27 | IPR002292 |
| PRINTS | PR00100 | Aspartate/ornithine carbamoyltransferase superfamily signature | 289 | 312 | 3.2E-25 | IPR006130 |
| PRINTS | PR00100 | Aspartate/ornithine carbamoyltransferase superfamily signature | 152 | 163 | 3.2E-25 | IPR006130 |
| PRINTS | PR00100 | Aspartate/ornithine carbamoyltransferase superfamily signature | 277 | 286 | 3.2E-25 | IPR006130 |
| PRINTS | PR00102 | Ornithine carbamoyltransferase signature | 68 | 82 | 3.8E-27 | IPR002292 |
| Hamap | MF_01109 | Ornithine carbamoyltransferase, catabolic [argI]. | 23 | 325 | 70.97731 | IPR024904 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75330.1 | ornithine carbamoyltransferase. | 0 |
| RefSeq | XP_034675588.1 | ornithine carbamoyltransferase, chloroplastic [Vitis riparia] | 0 |
| Q43814 | Ornithine carbamoyltransferase, chloroplastic OS=Pisum sativum OX=3888 GN=ARGF PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2L7Q9 | ornithine carbamoyltransferase OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg22252 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_2899 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019364 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15237, Sbi_jg56048 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26532 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006309 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01729, Sgl06882 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014726, gene:ENSEOMG00000031774 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009740, CQ.Regalona.r1.3BG0009900 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30046690 |
| Apiaceae | Apium graveolens | 1 | Ag9G00893 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G000720 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699579 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2712.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16124 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G75330.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018722m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g30470.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g071810.2N, BniB06g048570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1011 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1096 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g02730 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0285s00010.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g09010 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-1327 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.600 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00038470 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07343, Lb1G07345 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3142, BH07.2973, CH07.3043 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0142430, gene-QOZ80_2BG0197920 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0607460.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G019250, Oco04G020030 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g47590.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G247200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0203923 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G004160, Chr09G022300, Chr15G005560 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G499100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG041750, gene_TRIDC6BG048710 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G272200.1, TraesCS6B02G299700.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb188330_P001, Zm00001eb252020_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-8994 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g14226 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1403, evm.TU.LG07.1479 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g05980 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.613 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21603 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2817 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7410 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.201 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017568 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1698 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5426 |
| Salicaceae | Populus euphratica | 1 | populus_peu15241 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132604145, gene-LOC132628044 |
| Solanaceae | Solanum chilense | 2 | SOLCI002962700, SOLCI003607700 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007504, gene-LOC107015574 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1680 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1593 |
| Zosteraceae | Zostera marina | 1 | Zosma02g22570.v3.1 |