Basic Information
Locus ID:
nbisL1-mrna-5413
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 4673050 | 4682996 | - | nbisL1-mrna-5413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 42,668.89 Da | 66.45 | 64.23 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 326 | 366 | 2.31898E-26 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 325 | 371 | 8.8E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 326 | 372 | 1.58E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 311 | 376 | 4.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 327 | 365 | 2.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 327 | 366 | 11.51558 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 66 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039020726.1 | probable E3 ubiquitin-protein ligase LUL4 [Hibiscus syriacus] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A2Z1K8 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111095pilonHSYRG00158 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology