Basic Information
Locus ID:
nbisL1-mrna-5412
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 5061967 | 5068528 | + | nbisL1-mrna-5412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 114,018.70 Da | 49.64 | 108.29 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 265 | 306 | 1.95169E-20 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 552 | 591 | 2.9E-4 | IPR000225 |
| Pfam | PF04564 | U-box domain | 265 | 331 | 3.5E-17 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 335 | 634 | 7.92E-26 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 253 | 331 | 1.46E-24 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 533 | 869 | 6.17E-34 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 805 | 1019 | 9.72E-18 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 434 | 643 | 2.1E-21 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 644 | 881 | 3.8E-21 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 239 | 337 | 7.8E-25 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 12 | 128 | 6.2E-7 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 895 | 1025 | 4.2E-14 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 338 | 433 | 2.5E-7 | IPR011989 |
| SMART | SM00185 | arm_5 | 772 | 818 | 200.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 592 | 635 | 440.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 687 | 727 | 170.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 551 | 591 | 0.29 | IPR000225 |
| SMART | SM00185 | arm_5 | 897 | 935 | 130.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 365 | 405 | 96.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 264 | 327 | 2.0E-23 | IPR003613 |
| SMART | SM00185 | arm_5 | 939 | 979 | 69.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 821 | 861 | 21.0 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 260 | 334 | 30.50174 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 562 | 604 | 9.2224 | IPR000225 |
| Coils | Coil | Coil | 67 | 87 | - | - |
| Coils | Coil | Coil | 344 | 364 | - | - |
| Coils | Coil | Coil | 195 | 222 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20780.1 | senescence-associated E3 ubiquitin ligase 1. Encodes a protein containing a U-box and an ARM domain. | 0 |
| RefSeq | XP_011038724.1 | PREDICTED: U-box domain-containing protein 44-like isoform X1 [Populus euphratica] | 0 |
| Q10FT0 | U-box domain-containing protein 24 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2JR89 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |