Basic Information
Locus ID:
nbisL1-mrna-5400
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
BTB POZ and TAZ domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5972939 | 5975727 | + | nbisL1-mrna-5400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.78 | 46,465.65 Da | 51.55 | 88.47 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14733 | BACK | 197 | 257 | 1.30882E-5 | - |
| Pfam | PF00651 | BTB/POZ domain | 92 | 193 | 3.9E-12 | IPR000210 |
| Pfam | PF02135 | TAZ zinc finger | 279 | 364 | 3.8E-14 | IPR000197 |
| SUPERFAMILY | SSF54695 | POZ domain | 81 | 193 | 1.26E-15 | IPR011333 |
| SUPERFAMILY | SSF57933 | TAZ domain | 272 | 373 | 3.53E-23 | IPR035898 |
| Gene3D | G3DSA:1.20.1020.10 | TAZ domain | 271 | 393 | 4.4E-25 | IPR035898 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 72 | 195 | 1.2E-17 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 196 | 270 | 1.3E-11 | - |
| SMART | SM00551 | TAZ_2 | 272 | 365 | 1.4E-36 | IPR000197 |
| SMART | SM00225 | BTB_4 | 95 | 195 | 3.1E-5 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 95 | 163 | 10.985188 | IPR000210 |
| ProSiteProfiles | PS50134 | Zinc finger TAZ-type profile. | 269 | 367 | 9.332864 | IPR000197 |
| Coils | Coil | Coil | 252 | 272 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05690.1 | BTB and TAZ domain protein 3. BTB and TAZ domain protein. Acts redunantly with BT1 and BT2 during female gametophyte development. Acts with BT2 during male gametophyte development. | 0 |
| RefSeq | XP_048230953.1 | BTB/POZ and TAZ domain-containing protein 3 [Ricinus communis] | 0 |
| Q9SYL0 | BTB/POZ and TAZ domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=BT3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A6NK32 | BTB domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_030419 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology