Basic Information
Locus ID:
nbisL1-mrna-54
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr16 | 3166697 | 3170649 | - | nbisL1-mrna-54 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 70,013.76 Da | 46.14 | 88.91 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 19 | 122 | 5.36805E-49 | - |
| Pfam | PF03000 | NPH3 family | 212 | 477 | 3.7E-96 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 27 | 113 | 4.0E-8 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 114 | 4.87E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 12 | 165 | 1.6E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 125 | 0.0098 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 212 | 501 | 94.630356 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 97 | 11.047234 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 599 | 632 | - | - |
| Coils | Coil | Coil | 548 | 575 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30440.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021615908.1 | BTB/POZ domain-containing protein At1g30440 isoform X1 [Manihot esculenta] | 0 |
| Q9S9Q9 | BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana OX=3702 GN=At1g30440 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2IL93 | Uncharacterized protein MANES_06G060600 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology