Basic Information
Locus ID:
nbisL1-mrna-5394
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 4506602 | 4514225 | - | nbisL1-mrna-5394 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 83,844.57 Da | 42.86 | 65.54 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 488 | 773 | 3.0903E-64 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 537 | 566 | 3.0E-4 | IPR001680 |
| Pfam | PF08513 | LisH | 12 | 36 | 6.0E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 497 | 524 | 4.0E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 659 | 710 | 4.0E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 740 | 773 | 0.017 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 574 | 609 | 0.0074 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 486 | 773 | 1.19E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 406 | 620 | 3.5E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 621 | 773 | 4.4E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 485 | 524 | 3.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 570 | 610 | 2.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 527 | 566 | 9.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 735 | 773 | 0.0061 | IPR001680 |
| SMART | SM00320 | WD40_4 | 652 | 690 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 613 | 649 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 693 | 732 | 1.2 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0063 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 534 | 566 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 534 | 566 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 659 | 699 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 741 | 773 | 11.611251 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 741 | 773 | 11.022865 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 577 | 619 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 492 | 527 | 8.597424 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 492 | 533 | 10.274523 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.134343 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 577 | 612 | 8.676514 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 511 | 525 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 308 | 396 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_012478515.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Gossypium raimondii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D2RKN3 | LisH domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_005G131200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology