Basic Information
Locus ID:
nbisL1-mrna-539
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000003F_pilon | 3146655 | 3149801 | - | nbisL1-mrna-539 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 75,403.33 Da | 47.89 | 105.17 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 105 | 459 | 3.39E-15 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 103 | 397 | 7.5E-9 | IPR011989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18700.1 | Protein kinase family protein with ARM repeat domain. Encodes a microtubule-associated kinase-like protein RUNKEL (RUK). Contains a putative serine/threonine kinase domain and a microtubule-binding domain. RUK directly binds to microtubules in vitro and colocalizes with mitotic preprophase band, spindle, and phragmoplast in vivo. Required for cell plate expansion in cytokinesis. | 0 |
| RefSeq | XP_048235424.1 | serine/threonine-protein kinase RUNKEL [Ricinus communis] | 0 |
| F4JY37 | Serine/threonine-protein kinase RUNKEL OS=Arabidopsis thaliana OX=3702 GN=RUK PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2Y499 | Protein kinase domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_015230 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5696 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4224 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah020593 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g191600 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg24770, Sbi_jg41685, Sbi_jg48458, Sbi_jg8634 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19970, Seu_jg27764 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00022287, GOSA_00027236 |
| Amaranthaceae | Suaeda glauca | 8 | Sgl00072, Sgl05142, Sgl05143, Sgl05155, Sgl05160, Sgl42635 ... |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000012735, gene:ENSEOMG00000032130 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0015770, CQ.Regalona.r1.3BG0016730 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30238410, pistato.v30245450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02447 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G002920 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103711717 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.1517.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G20824 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G18700.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012450m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g25640.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g044010.2N, BniB08g009460.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0959, Ceq09G1225 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1033, Cgl03G1039, Cgl09G1314 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g04950 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0075s00021.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g03590 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-5064, nbisL1-mrna-5065 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1368 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026208 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G08817, Lb2G08818, Lb2G08820 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.966, BH02.1157, CH02.1274 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0005050, gene-QOZ80_1BG0053560 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0193160.1, HORVU.MOREX.r3.3HG0254050.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_052177 |
| Poaceae | Oryza coarctata | 2 | Oco01G006990, Oco02G007320 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g15480.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G106800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604022, Pt_Chr0605285 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G026290, Chr03G001880, Chr05G004030, Chr08G003230 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G739900, Tel3E01G308600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG062730, gene_TRIDC2BG066680 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS2A02G436400.1, TraesCS2B02G456800.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb127880_P001, Zm00001eb333450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-32444, nbis-gene-7302 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g7399, Zma_g9729 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2016, evm.TU.LG14.316 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g34030 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.648 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16040 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16706 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-539, nbisL1-mrna-540 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.385 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007779 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13690 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3591 |
| Salicaceae | Populus euphratica | 3 | populus_peu07801, populus_peu09144, populus_peu37742 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609350 |
| Solanaceae | Solanum chilense | 1 | SOLCI001690200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028809 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8495 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1556 |
| Zosteraceae | Zostera marina | 1 | Zosma01g20210.v3.1 |