Basic Information
Locus ID:
nbisL1-mrna-5389
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 4471174 | 4475268 | - | nbisL1-mrna-5389 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 48,057.45 Da | 54.40 | 70.42 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 262 | 326 | 1.38323E-23 | - |
| CDD | cd16872 | ARID_HMGB9-like | 38 | 122 | 2.0381E-52 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 262 | 329 | 2.6E-16 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 40 | 122 | 3.0E-18 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 38 | 136 | 6.41E-30 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 255 | 334 | 1.03E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 246 | 342 | 3.6E-23 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 28 | 130 | 1.4E-27 | IPR036431 |
| SMART | SM00501 | bright_3 | 36 | 127 | 6.9E-30 | IPR001606 |
| SMART | SM01014 | ARID_2 | 32 | 122 | 2.5E-29 | - |
| SMART | SM00398 | hmgende2 | 261 | 330 | 2.4E-21 | IPR009071 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 262 | 329 | 16.449099 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 35 | 126 | 26.049633 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 399 | - | - |
| Coils | Coil | Coil | 311 | 331 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_039016493.1 | high mobility group B protein 15-like isoform X1 [Hibiscus syriacus] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6A3CS83 | High mobility group B protein 15 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00002511pilonHSYRG00528 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology