Basic Information
Locus ID:
nbisL1-mrna-5384
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 4425888 | 4427103 | + | nbisL1-mrna-5384 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 11,814.41 Da | 70.10 | 107.43 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 10 | 101 | 9.16E-10 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 108 | 1.4E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 19 | 59 | 3.3E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 26 | 62 | 10.976305 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 26 | 62 | 9.203785 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 46 | 60 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_028218123.1 | WD repeat-containing protein LWD1 [Glycine soja] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2I0LEY4 | WD_REPEATS_REGION domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_000372 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology