Basic Information
Locus ID:
nbisL1-mrna-5380
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000018F_pilon | 1732551 | 1735798 | - | nbisL1-mrna-5380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 104,829.28 Da | 33.22 | 102.80 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 28 | 72 | 5.7E-7 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 710 | 805 | 2.6E-13 | IPR001245 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 827 | 922 | 1.9E-5 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 484 | 543 | 2.9E-9 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 697 | 924 | 2.73E-33 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 61 | 309 | 1.8E-56 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 227 | 583 | 4.32E-72 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 791 | 935 | 1.4E-20 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 283 | 380 | 3.0E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 177 | 282 | 1.4E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 524 | 627 | 1.6E-29 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 708 | 790 | 2.4E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 176 | 1.7E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 381 | 523 | 4.5E-30 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 506 | 530 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 194 | 218 | 34.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 338 | 362 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 266 | 290 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 98 | 122 | 38.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 434 | 458 | 75.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 554 | 577 | 46.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 708 | 954 | 11.778583 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 292 | 315 | 7.149804 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 714 | 738 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 509 | 522 | 3.4E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 554 | 567 | 3.4E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08590.1 | Leucine-rich receptor-like protein kinase family protein. similar to CLV1-like leucine rich repeat transmembrane receptor-like protein kinase (Ipomoea nil) (U77888) | 0 |
| RefSeq | XP_048236074.1 | leucine-rich repeat receptor-like protein kinase PXL1 [Ricinus communis] | 0 |
| Q9FRS6 | Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana OX=3702 GN=PXL1 PE=1 SV=1 | 0 | |
| TrEMBL | B9S7N4 | Protein kinase domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0610070 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology