Basic Information
Locus ID:
nbisL1-mrna-534
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 4219723 | 4221996 | + | nbisL1-mrna-534 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 26,017.70 Da | 19.49 | 108.56 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 15 | 52 | 2.7E-7 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 96 | 134 | 4.3E-8 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 2 | 242 | 1.38E-43 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 1 | 248 | 2.3E-51 | IPR011989 |
| SMART | SM00185 | arm_5 | 177 | 217 | 500.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 13 | 53 | 6.1E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 54 | 94 | 4.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 95 | 135 | 0.23 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 24 | 66 | 10.1674 | IPR000225 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_039043964.1 | U-box domain-containing protein 13-like isoform X3 [Hibiscus syriacus] | 0 |
| Q9SNC6 | U-box domain-containing protein 13 OS=Arabidopsis thaliana OX=3702 GN=PUB13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6A2Y6A4 | RING-type E3 ubiquitin transferase OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112746pilonHSYRG00018 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology