Basic Information
Locus ID:
nbisL1-mrna-5336
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 4537907 | 4546978 | + | nbisL1-mrna-5336 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 157,895.19 Da | 41.84 | 88.63 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 246 | 281 | 4.8E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 528 | 836 | 1.79E-11 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 121 | 440 | 2.85E-32 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 712 | 1362 | 2.47E-5 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 18 | 289 | 1.1E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 293 | 525 | 1.1E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 528 | 945 | 7.8E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 242 | 281 | 3.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 774 | 832 | 3.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 372 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 519 | 553 | 91.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 121 | 160 | 0.002 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1229 | 1279 | 38.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 293 | 330 | 0.04 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1325 | 1363 | 220.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1064 | 1103 | 95.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 249 | 284 | 11.866497 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 249 | 284 | 14.351543 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G01860.1 | Transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_021676171.1 | uncharacterized protein LOC110661739 isoform X1 [Hevea brasiliensis] | 0 |
| Q9USZ0 | tRNA (34-2'-O)-methyltransferase regulator trm734 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=trm734 PE=3 SV=1 | 0 | |
| TrEMBL | A0A4U5MN74 | WD_REPEATS_REGION domain-containing protein OS=Populus alba OX=43335 GN=D5086_0000306300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg9011, jg9012 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13411 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah000023 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g122240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31207, Sbi_jg58067 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25690 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004561 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54622, Sgl59958 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000004399, gene:ENSEOMG00000005961 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0027700, CQ.Regalona.r1.5BG0029340 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30007520 |
| Apiaceae | Apium graveolens | 1 | Ag2G01803 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G000410 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721829 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2251.V1.1, AsparagusV1_03.53.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G16668 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G01860.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10027621m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g01700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g044200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0526 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0544 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g10220 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g12080 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-6207, nbisL1-mrna-9584 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.525 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016528 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22128 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.5050, BH01.5181, BH01.5182, Contig1042.26 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0417170.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_071556, gene-QYE76_071562 |
| Poaceae | Oryza coarctata | 1 | Oco06G000670 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g02110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G509500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0100837 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G006650, Chr07G005000 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G640100, Tel4E01G642200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG076450, gene_TRIDC5AG078410 |
| Poaceae | Triticum aestivum | 4 | TraesCS5A02G539500.1, TraesCS5A02G556800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb404090_P002 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-3178, nbis-gene-3179, nbis-gene-3180 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g2259 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1342, evm.TU.LG09.635 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g21140 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.700 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21520 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6309 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18584 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.656 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009278 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1640 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5336 |
| Salicaceae | Populus euphratica | 1 | populus_peu31392 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644899 |
| Solanaceae | Solanum chilense | 1 | SOLCI006419400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008348 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_16384 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G2842 |
| Zosteraceae | Zostera marina | 1 | Zosma03g19680.v3.1 |