Basic Information
Locus ID:
nbisL1-mrna-5333
Species & Taxonomic ID:
Hibiscus hamabo Siebold & Zucc. & 1841
Description:
PHD finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3937676 | 3938157 | - | nbisL1-mrna-5333 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 13,821.25 Da | 60.17 | 45.63 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15613 | PHD_AL_plant | 73 | 122 | 1.59108E-26 | IPR044104 |
| Pfam | PF00628 | PHD-finger | 73 | 120 | 9.3E-11 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 62 | 122 | 1.55E-18 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 120 | 2.0E-25 | IPR013083 |
| SMART | SM00249 | PHD_3 | 72 | 120 | 8.9E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 70 | 122 | 9.3743 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 73 | 119 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 58 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14510.1 | alfin-like 7. AL7 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. | 0 |
| RefSeq | XP_022724656.1 | PHD finger protein ALFIN-LIKE 7-like isoform X1 [Durio zibethinus] | 0 |
| Q8LA16 | PHD finger protein ALFIN-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=AL7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J9L8T5 | PHD-type domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_009623 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 4 | Ag1G00638, Ag1G00639, Ag7G00403, Ag7G01840 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005030 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G26289 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-5333 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG067680 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6903 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7207 |