Basic Information
Locus ID:
nbisL1-mrna-533
Species & Taxonomic ID:
Rhizophora apiculata & 106626
Genome Assembly:
GCA_037832385.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 4041575 | 4046546 | + | nbisL1-mrna-533 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 158,142.88 Da | 39.78 | 75.60 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 837 | 923 | 1.65661E-29 | - |
| Pfam | PF00855 | PWWP domain | 837 | 923 | 1.7E-16 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 833 | 937 | 7.82E-26 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 827 | 930 | 1.6E-25 | - |
| SMART | SM00293 | PWWP_4 | 837 | 898 | 1.7E-9 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 839 | 900 | 14.321783 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1118 | 1134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1303 | 1328 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 681 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 784 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1054 | 1068 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1039 | 1134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1300 | 1336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 468 | - | - |
| Coils | Coil | Coil | 1454 | 1456 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021644089.1 | uncharacterized protein LOC110638000 isoform X2 [Hevea brasiliensis] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2MS56 | Dentin sialophosphoprotein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology