Basic Information
Locus ID:
nbisL1-mrna-531
Species & Taxonomic ID:
Ceriops zippeliana & 413951
Genome Assembly:
GCA_037897445.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 000003F_pilon | 3100784 | 3103012 | + | nbisL1-mrna-531 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 16,799.06 Da | 34.90 | 59.03 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 91 | 133 | 1.0E-5 | IPR018957 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 37 | 84 | 2.35E-16 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 138 | 1.32E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 86 | 144 | 3.5E-9 | IPR013083 |
| SMART | SM00184 | ring_2 | 91 | 133 | 1.3E-4 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 26 | 90 | 25.392199 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 91 | 134 | 11.264779 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_047315001.1 | E3 ubiquitin-protein ligase MIEL1 [Impatiens glandulifera] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2LGW0 | RING-type domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology