Basic Information
Locus ID:
nbisL1-mrna-530
Species & Taxonomic ID:
Carallia pectinifolia & 98586
Genome Assembly:
GCA_037832335.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr01 | 4427787 | 4429601 | + | nbisL1-mrna-530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 24,865.99 Da | 52.14 | 69.16 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 29 | 73 | 1.05036E-30 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 30 | 71 | 5.0E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 27 | 84 | 1.16E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 4 | 85 | 5.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 31 | 71 | 4.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 31 | 72 | 13.462976 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 46 | 55 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23780.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021630342.1 | E3 ubiquitin-protein ligase RNF185 [Manihot esculenta] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2C9UUV7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology