Basic Information
Locus ID:
nbisL1-mrna-5299
Species & Taxonomic ID:
Rhizophora mangle & 40031
Genome Assembly:
GCA_037832345.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 002084F_pilon | 4325089 | 4328915 | - | nbisL1-mrna-5299 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 69,388.72 Da | 53.69 | 69.34 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 472 | 557 | 5.9E-20 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 574 | 604 | 1.3E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 472 | 557 | 6.8E-32 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 307 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 449 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 428 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 526 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 471 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 531 | - | - |
| Coils | Coil | Coil | 478 | 498 | - | - |
| Coils | Coil | Coil | 510 | 530 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_021675821.1 | calponin homology domain-containing protein DDB_G0272472-like [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2P2JCK1 | Uncharacterized protein LOC105642632 isoform X2 OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology